Glyma05g26900 - SoyBase

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Report for Sequence Feature Glyma05g26900

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32786902
stop:	32790994
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01900	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr2:406136-408933 FORWARD LENGTH=417	SoyBase	E_val: 0	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0565	KOG	Inositol polyphosphate 5-phosphatase and related proteins	JGI		ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PTHR11200:SF29	Panther	INOSITOL PHOSPHATASE SKIP	JGI		ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_G7IBG6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Type II inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7IBG6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023393DF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023393DF related cluster n=1 Tax=unknown RepID=UPI00023393DF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26900

Paralog	Evidence	Comments
Glyma08g09870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g138100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26900

Limit To All Plant Sequences

>Glyma05g26900.1   sequence type=CDS   gene model=Glyma05g26900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCCTACATTAGTGGCTAATAAGATATTCAAGAAGAGACTTGGAAGCAGCAATTTTATAGCAGATTTTCCTAGTTATAAAGAACCCTTGCTGGGTATTGTAGACATTGATCAGAACTCAAAAACCATTCTTAATGATCACAAGGACACACACAAATACAAGGTATTTGTTAGTACATGGAACGTAGGTGGGATTGCACCGGATGAAGATTTGAATATAGATGATTTGTTTGAGACATTCAACAACTCTTGTGACATCTATATACTAGGGTTTCAAGAAATAGTGCCTCTAAGAGCATCAAATGTATTGGGCTCCGAAAACAATGAGATTTCTATGAAATGGAATTCAAAAATCAGGGAAGCCTTGAACAAGAAAACACATCAAAGGGGCAAAGATGCTAAAAAACAGGAGCTAAAGAAAAATTTTCCCAATAAGAAAGAAAATCCAGCTAAGTGCTGTGAAGCCCCACATGATTTCCAATGTATCATTAGCAAGCAAATGGTTGGATTATTCATATCTGTATGGATTAGAAGAGATCTTTGTCCATTCATTCGGCATCCAAGCGTGTCATGTGTAGGCTGTGGCATAATGGGCTGCTTAGGAAACAAGGGTTCTGTATCAGTGAGATTTCAGTTACATGAAACAAGCTTCTGCTTTGTGTGCAGCCATCTAGCTTCAGGGGGCAGCGAAGGTGATGAAAAGTACAGGAACTCTAATGTTGCTGAAATTTTTTCTCGGACAAGTTTTCCTAGAGGCCCTTTGCTTGATTTGCCTAGAACCATTCTTGATCATGATCATGTAATATTTCTTGGAGATCTAAATTACAGAATTTCTCTACCAGAAGAAACGACACGCTTGCTTGTTGAAAAAAGAGACTGGGATTCCTTATTAGAAAATGATCAGCTAATAATGGAGCTAATGACTGGAAACATGTTAAGAGGATGGAATGAAGGAGCAATTAAATTTGGACCTACCTACAAATATTGTCCAAATTCAGACATTTACTATGGATGTTGCTATCATGGCAAAAAGGCAGAAAAGAGAAGAGCACCAGCATGGTGTGATCGAATAGTATGGTATGGTGAGGGTCTAAAGCAACTTCAGTACACTAGAATTGAATCAAAACTGTCAGATCATAGACCTGTTAAGGCTATGTTTATGGCAGAAGTCATGGTTTTACCAGAGCTGATGAAAAACTTGCAAAGCTTATTCCTATCAGAAAGATACGAGCAAATTAAAACTCCCCTTGAAGTTTCCACCACTGATGATTTTGTAAATAGAAAACGATCAAGCTTCCGATTGTGA

Predicted protein sequences of Glyma05g26900

Limit To All Plant Sequences

>Glyma05g26900.1   sequence type=predicted peptide   gene model=Glyma05g26900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWPTLVANKIFKKRLGSSNFIADFPSYKEPLLGIVDIDQNSKTILNDHKDTHKYKVFVSTWNVGGIAPDEDLNIDDLFETFNNSCDIYILGFQEIVPLRASNVLGSENNEISMKWNSKIREALNKKTHQRGKDAKKQELKKNFPNKKENPAKCCEAPHDFQCIISKQMVGLFISVWIRRDLCPFIRHPSVSCVGCGIMGCLGNKGSVSVRFQLHETSFCFVCSHLASGGSEGDEKYRNSNVAEIFSRTSFPRGPLLDLPRTILDHDHVIFLGDLNYRISLPEETTRLLVEKRDWDSLLENDQLIMELMTGNMLRGWNEGAIKFGPTYKYCPNSDIYYGCCYHGKKAEKRRAPAWCDRIVWYGEGLKQLQYTRIESKLSDHRPVKAMFMAEVMVLPELMKNLQSLFLSERYEQIKTPLEVSTTDDFVNRKRSSFRL*

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