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Report for Sequence Feature Glyma05g26890

Feature Type:gene_model
Chromosome:Gm05
Start:32783122
stop:32783814
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g26890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03430AT Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr3:814481-814732 FORWARD LENGTH=83 SoyBaseE_val: 7.00E-26ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
PTHR24753Panther FAMILY NOT NAMED JGI ISS
PTHR24753:SF39Panther JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_C6SY31UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SY31_SOYBN SoyBaseE_val: 5.00E-51ISS
UniRef100_O82040UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polcalcin Phl p 7 n=1 Tax=Phleum pratense RepID=POLC7_PHLPR SoyBaseE_val: 2.00E-26ISS

Expression Patterns of Glyma05g26890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26890
ParalogEvidenceComments
Glyma08g09840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g138000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g26890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g26890
>Glyma05g26890.1   sequence type=CDS   gene model=Glyma05g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGTGAAAGGGAAGAGTGTGAACGCGTTTTCAAGCGCTTTGATGTGAATGGCGATGGCAATATCTCCTTGTCTGAGTTTGCAGATGCTCTCAAAGTGCTAGGCTTAACTTCACAGGAGGAAGTTGAGCGTCGAATGGCAGAGATTGATAAAGACGGTGATGGACACATTACACTTAATGAGTTGATTGAATTTCATACTGCCAACCCTAGCTTGATGAAGGATGTCTTGAAGAAACTCTAA
Predicted protein sequences of Glyma05g26890
>Glyma05g26890.1   sequence type=predicted peptide   gene model=Glyma05g26890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEREECERVFKRFDVNGDGNISLSEFADALKVLGLTSQEEVERRMAEIDKDGDGHITLNELIEFHTANPSLMKDVLKKL*






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