Glyma05g26880 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g26880

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32777946
stop:	32782225
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33170	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:15995701-15998673 REVERSE LENGTH=990	SoyBase	E_val: 8.00E-133	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B6SVG6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vegetative storage protein n=1 Tax=Zea mays RepID=B6SVG6_MAIZE	SoyBase	E_val: 4.00E-158	ISS
UniRef100_I1K3C1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K3C1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26880

Paralog	Evidence	Comments
Glyma08g09830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g137900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26880

Limit To All Plant Sequences

>Glyma05g26880.3   sequence type=transcript   gene model=Glyma05g26880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATATGAATATAACTACTGGGCCATGAACACACATAGGTTCAACTCGTTTTCACGTTGAACGAGTAATGGTTCAGTGTGATGAAAACGATGACGAAGCAACAATGTCAATGTCCATGGACCCTCGCGTGAGGCACGCACGAGCCATAACATCACACGCCAAAGACCGCGCAGTGTGGAACAACCTCATAACCCACTACTCCAAATCCAACCTCTCATCCTACGCTGTCTCCCTGTTTCACAGACTCCCTTTTCCTCCCAACGTTGTCTCATGGACCGCATTAATCTCCGCGCACTCCAACACCCTCCTCTCCCTCCGCCACTTCCTCGCCATGCTCCGCCACAACACTCTCCCCAACCACCGCACCCTTGCCTCCCTCTTCGCCACCTGCGCCGCCCTCACTGCCGTCTCTTTTGCCCTCTCTCTCCACTCCCTCGCCCTCAAACTCGCCCTCGCCCACCACCCCTTCCCCGCCTCCTCCCTCCTCTCCGTCTACGCCAAGCTCCGCATGCCCCACAATGCACGCAAGGTGTTCGACGAAATTCCCCAACCAGACAACGTTTGTTTCTCCGCCTTGGTAGTTGCACTCGCCCAGAATTCCCGCTCCGTCGACGCTTTATCGGTCTTTTCTGACATGAGGTGTCGCGGTTTTGCGTCAACTGTTCACGGTGTTTCTGGTGGTTTGCGTGCTGCGGCTCAGCTCGCTGCGTTGGAGCAATGTAGAATGATGCATGCACATGCAATTATTGCTGGGTTGGATTCGAATGTGGTGGTGGGTAGTGCTGTCGTTGATGGATATGGTAAAGCGGGTGTTGTTGACGATGCAAGGAGGGTTTTTGAGGATAGTTTGGATGATATGAATATTGCGGGGTGGAATGCAATGATGGCTGGTTATGCACAGCATGGGGATTATCAATCTGCTTTTGAACTGTTTGAGTCTTTGGAAGGTTTTGGACTTGTGCCTGATGAGTATACTTTTTTGGCGATATTGACTGCTTTGTGTAATGCTGGGATGTTTCTGGAGATTTATCGGTGGTTTACGAGGATGAGAGTGGATTATGGTTTGGAACCGAGTTTGGAGCATTATACGTGTTTGGTGGGTGCAATGGCACGTGCTGGAGAATTGGAGCGTGCGGAGAGGGTTGTGTTGACAATGCCGTTTGAACCGGATGCTGCAGTTTGGCGAGCTTTGCTATCAGTTTGTGCGTATCGTGGTGAGGCTGACAAGGCTTGGTGTATGGCGAAGAGGGTGTTGGAGCTGGAGCCACATGATGATTATGCTTATGTTAGTGTTGCTAATGTGTTATCAAGTGCAGGGAGGTGGGATGATGTTGCGGAATTGAGGAAGATGATGAAGGATAGGAGGGTGAAGAAAAAAGGTGGGAGGAGTTGGATTGAAGTGCAGGGAGAAGTTCATGTTTTTGTGGCGGGGGATTGGAAGCATGAGAGGTCCAAGGAAATTTATCAGAAGTTGGCAGAGCTTATGGGGGATATTGAAAAATTAGGGTACGTTCCTGTTTGGGATGAGGTGTTGCATAATGTTGGGGAGGAAAAGAGAAAGGAGTCTCTTTGGTATCACAGTGAGAAGTTAGCTGTTGCGTTTGGAGTGTTGTGTGGATCTGCACCACCAGGGAAGCCGTTAAGGATTGTGAAGAATTTGAGGATTTGTAAGGATTGCCACGAGGCTTTTAAGTATATGACAAGAGTTTTAGAAAGGGAAATAATTGTGAGGGATGTCAACAGATATCACAGATTTGTGAATGGTAACTGTACTTGTAGAGACATATGGTAGCATATACATGTTTGAGGCTTGTTTCTAATGATAAGTGATGCTGAGAAAGAAAACTGATTTTTCCCCATTACGATGCAGCTAAGGTGGCTGAGTGGGCGGAACTCCACTTAATCCACTTGACATTTGATGTTTGAATAACATTCTGAAACTGTCGAGGTGTCTAGTTTTAATCACTTGAAAGACTGCATGAATTCATGCATCAAATACAGAGATGGGGGAGAATGAAGTGGCAAAATCGCATGTTTTTGGCATCAGTGAGGAAATGCTTAGAGGAAGAAGGTTGAGGCTGCCATTGTCAAAACACGCCCTCATAACACTTTTAACAGCTGAAGTGAGGATTTCAACACCACTAGCTGCCCTTGGGGAACGTATTATTCATTGATTGGAAAATTCAACAGCTTATACAAAATTCAAAAATCACTTCTTGCTTAGCATAAATAATTGATTGTGTTGGCTTCAAAGGGTAAAGTTATTGAAAGATACAGTATATATGATTGATATTCTGTCATAGTTGTTAATGCAGATTACTACCATAAAATTTCCAAAAGGGATAATTACAATCTGTTGAGGTTAGCGGTAAATACACCTAACCCTACTTGATTAAAATGTTATACATATCTTCCTTATCTTATATATTATTCATTTCCGTTATTTAAAAATAAAATAAAAAATCAC

Coding sequences of Glyma05g26880

Limit To All Plant Sequences

>Glyma05g26880.2   sequence type=CDS   gene model=Glyma05g26880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCAGTGTGATGAAAACGATGACGAAGCAACAATGTCAATGTCCATGGACCCTCGCGTGAGGCACGCACGAGCCATAACATCACACGCCAAAGACCGCGCAGTGTGGAACAACCTCATAACCCACTACTCCAAATCCAACCTCTCATCCTACGCTGTCTCCCTGTTTCACAGACTCCCTTTTCCTCCCAACGTTGTCTCATGGACCGCATTAATCTCCGCGCACTCCAACACCCTCCTCTCCCTCCGCCACTTCCTCGCCATGCTCCGCCACAACACTCTCCCCAACCACCGCACCCTTGCCTCCCTCTTCGCCACCTGCGCCGCCCTCACTGCCGTCTCTTTTGCCCTCTCTCTCCACTCCCTCGCCCTCAAACTCGCCCTCGCCCACCACCCCTTCCCCGCCTCCTCCCTCCTCTCCGTCTACGCCAAGCTCCGCATGCCCCACAATGCACGCAAGGTGTTCGACGAAATTCCCCAACCAGACAACGTTTGTTTCTCCGCCTTGGTAGTTGCACTCGCCCAGAATTCCCGCTCCGTCGACGCTTTATCGGTCTTTTCTGACATGAGGTGTCGCGGTTTTGCGTCAACTGTTCACGGTGTTTCTGGTGGTTTGCGTGCTGCGGCTCAGCTCGCTGCGTTGGAGCAATGTAGAATGATGCATGCACATGCAATTATTGCTGGGTTGGATTCGAATGTGGTGGTGGGTAGTGCTGTCGTTGATGGATATGGTAAAGCGGGTGTTGTTGACGATGCAAGGAGGGTTTTTGAGGATAGTTTGGATGATATGAATATTGCGGGGTGGAATGCAATGATGGCTGGTTATGCACAGCATGGGGATTATCAATCTGCTTTTGAACTGTTTGAGTCTTTGGAAGGTTTTGGACTTGTGCCTGATGAGTATACTTTTTTGGCGATATTGACTGCTTTGTGTAATGCTGGGATGTTTCTGGAGATTTATCGGTGGTTTACGAGGATGAGAGTGGATTATGGTTTGGAACCGAGTTTGGAGCATTATACGTGTTTGGTGGGTGCAATGGCACGTGCTGGAGAATTGGAGCGTGCGGAGAGGGTTGTGTTGACAATGCCGTTTGAACCGGATGCTGCAGTTTGGCGAGCTTTGCTATCAGTTTGTGCGTATCGTGGTGAGGCTGACAAGGCTTGGTGTATGGCGAAGAGGGTGTTGGAGCTGGAGCCACATGATGATTATGCTTATGTTAGTGTTGCTAATGTGTTATCAAGTGCAGGGAGGTGGGATGATGTTGCGGAATTGAGGAAGATGATGAAGGATAGGAGGGTGAAGAAAAAAGGTGGGAGGAGTTGGATTGAAGTGCAGGGAGAAGTTCATGTTTTTGTGGCGGGGGATTGGAAGCATGAGAGGTCCAAGGAAATTTATCAGAAGTTGGCAGAGCTTATGGGGGATATTGAAAAATTAGGGTACGTTCCTGTTTGGGATGAGGTGTTGCATAATGTTGGGGAGGAAAAGAGAAAGGAGTCTCTTTGGTATCACAGTGAGAAGTTAGCTGTTGCGTTTGGAGTGTTGTGTGGATCTGCACCACCAGGGAAGCCGTTAAGGATTGTGAAGAATTTGAGGATTTGTAAGGATTGCCACGAGGCTTTTAAGTATATGACAAGAGTTTTAGAAAGGGAAATAATTGTGAGGGATGTCAACAGATATCACAGATTTGTGAATGGTAACTGTACTTGTAGAGACATATGGTAG

>Glyma05g26880.3   sequence type=CDS   gene model=Glyma05g26880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCAGTGTGATGAAAACGATGACGAAGCAACAATGTCAATGTCCATGGACCCTCGCGTGAGGCACGCACGAGCCATAACATCACACGCCAAAGACCGCGCAGTGTGGAACAACCTCATAACCCACTACTCCAAATCCAACCTCTCATCCTACGCTGTCTCCCTGTTTCACAGACTCCCTTTTCCTCCCAACGTTGTCTCATGGACCGCATTAATCTCCGCGCACTCCAACACCCTCCTCTCCCTCCGCCACTTCCTCGCCATGCTCCGCCACAACACTCTCCCCAACCACCGCACCCTTGCCTCCCTCTTCGCCACCTGCGCCGCCCTCACTGCCGTCTCTTTTGCCCTCTCTCTCCACTCCCTCGCCCTCAAACTCGCCCTCGCCCACCACCCCTTCCCCGCCTCCTCCCTCCTCTCCGTCTACGCCAAGCTCCGCATGCCCCACAATGCACGCAAGGTGTTCGACGAAATTCCCCAACCAGACAACGTTTGTTTCTCCGCCTTGGTAGTTGCACTCGCCCAGAATTCCCGCTCCGTCGACGCTTTATCGGTCTTTTCTGACATGAGGTGTCGCGGTTTTGCGTCAACTGTTCACGGTGTTTCTGGTGGTTTGCGTGCTGCGGCTCAGCTCGCTGCGTTGGAGCAATGTAGAATGATGCATGCACATGCAATTATTGCTGGGTTGGATTCGAATGTGGTGGTGGGTAGTGCTGTCGTTGATGGATATGGTAAAGCGGGTGTTGTTGACGATGCAAGGAGGGTTTTTGAGGATAGTTTGGATGATATGAATATTGCGGGGTGGAATGCAATGATGGCTGGTTATGCACAGCATGGGGATTATCAATCTGCTTTTGAACTGTTTGAGTCTTTGGAAGGTTTTGGACTTGTGCCTGATGAGTATACTTTTTTGGCGATATTGACTGCTTTGTGTAATGCTGGGATGTTTCTGGAGATTTATCGGTGGTTTACGAGGATGAGAGTGGATTATGGTTTGGAACCGAGTTTGGAGCATTATACGTGTTTGGTGGGTGCAATGGCACGTGCTGGAGAATTGGAGCGTGCGGAGAGGGTTGTGTTGACAATGCCGTTTGAACCGGATGCTGCAGTTTGGCGAGCTTTGCTATCAGTTTGTGCGTATCGTGGTGAGGCTGACAAGGCTTGGTGTATGGCGAAGAGGGTGTTGGAGCTGGAGCCACATGATGATTATGCTTATGTTAGTGTTGCTAATGTGTTATCAAGTGCAGGGAGGTGGGATGATGTTGCGGAATTGAGGAAGATGATGAAGGATAGGAGGGTGAAGAAAAAAGGTGGGAGGAGTTGGATTGAAGTGCAGGGAGAAGTTCATGTTTTTGTGGCGGGGGATTGGAAGCATGAGAGGTCCAAGGAAATTTATCAGAAGTTGGCAGAGCTTATGGGGGATATTGAAAAATTAGGGTACGTTCCTGTTTGGGATGAGGTGTTGCATAATGTTGGGGAGGAAAAGAGAAAGGAGTCTCTTTGGTATCACAGTGAGAAGTTAGCTGTTGCGTTTGGAGTGTTGTGTGGATCTGCACCACCAGGGAAGCCGTTAAGGATTGTGAAGAATTTGAGGATTTGTAAGGATTGCCACGAGGCTTTTAAGTATATGACAAGAGTTTTAGAAAGGGAAATAATTGTGAGGGATGTCAACAGATATCACAGATTTGTGAATGGTAACTGTACTTGTAGAGACATATGGTAG

Predicted protein sequences of Glyma05g26880

Limit To All Plant Sequences

>Glyma05g26880.2   sequence type=predicted peptide   gene model=Glyma05g26880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQCDENDDEATMSMSMDPRVRHARAITSHAKDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALISAHSNTLLSLRHFLAMLRHNTLPNHRTLASLFATCAALTAVSFALSLHSLALKLALAHHPFPASSLLSVYAKLRMPHNARKVFDEIPQPDNVCFSALVVALAQNSRSVDALSVFSDMRCRGFASTVHGVSGGLRAAAQLAALEQCRMMHAHAIIAGLDSNVVVGSAVVDGYGKAGVVDDARRVFEDSLDDMNIAGWNAMMAGYAQHGDYQSAFELFESLEGFGLVPDEYTFLAILTALCNAGMFLEIYRWFTRMRVDYGLEPSLEHYTCLVGAMARAGELERAERVVLTMPFEPDAAVWRALLSVCAYRGEADKAWCMAKRVLELEPHDDYAYVSVANVLSSAGRWDDVAELRKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQKLAELMGDIEKLGYVPVWDEVLHNVGEEKRKESLWYHSEKLAVAFGVLCGSAPPGKPLRIVKNLRICKDCHEAFKYMTRVLEREIIVRDVNRYHRFVNGNCTCRDIW*

>Glyma05g26880.3   sequence type=predicted peptide   gene model=Glyma05g26880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQCDENDDEATMSMSMDPRVRHARAITSHAKDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALISAHSNTLLSLRHFLAMLRHNTLPNHRTLASLFATCAALTAVSFALSLHSLALKLALAHHPFPASSLLSVYAKLRMPHNARKVFDEIPQPDNVCFSALVVALAQNSRSVDALSVFSDMRCRGFASTVHGVSGGLRAAAQLAALEQCRMMHAHAIIAGLDSNVVVGSAVVDGYGKAGVVDDARRVFEDSLDDMNIAGWNAMMAGYAQHGDYQSAFELFESLEGFGLVPDEYTFLAILTALCNAGMFLEIYRWFTRMRVDYGLEPSLEHYTCLVGAMARAGELERAERVVLTMPFEPDAAVWRALLSVCAYRGEADKAWCMAKRVLELEPHDDYAYVSVANVLSSAGRWDDVAELRKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQKLAELMGDIEKLGYVPVWDEVLHNVGEEKRKESLWYHSEKLAVAFGVLCGSAPPGKPLRIVKNLRICKDCHEAFKYMTRVLEREIIVRDVNRYHRFVNGNCTCRDIW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain