SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68100 | AT | Annotation by Michelle Graham. TAIR10: ZIP metal ion transporter family | chr1:25521325-25524032 FORWARD LENGTH=469 | SoyBase | E_val: 5.00E-161 | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0046873 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG2693 | KOG | Putative zinc transporter | JGI | ISS | |
| PTHR16950 | Panther | ZINC TRANSPORTER SLC39A7 (HISTIDINE-RICH MEMBRANE PROTEIN KE4) | JGI | ISS | |
| PTHR16950:SF2 | Panther | IAA-ALANINE RESISTANCE PROTEIN 1 | JGI | ISS | |
| PF02535 | PFAM | ZIP Zinc transporter | JGI | ISS | |
| UniRef100_B9HJK9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ZIP transporter n=1 Tax=Populus trichocarpa RepID=B9HJK9_POPTR | SoyBase | E_val: 2.00E-167 | ISS |
| UniRef100_I1K3B7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3B7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma05g26820 not represented in the dataset |
Glyma05g26820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g09810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g137400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g26820.2 sequence type=transcript gene model=Glyma05g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTACACTAATAAGCTTAGCTAAATATGGATGTTATAACATTGGGAATCATAGTCGGCATTATCATCCTCTTCTTAGTAATTGTTTGCTACTTCTCCATCGAAGGCACTTGCAACTCACGCTCTTAACACTAACACTCTTCAATCTCTCTCTATTTTTCAATTCCATGGCATTGGGTAGAAAAAAGAGTGTGCAATTAGCATTTTTGCTTCTCCTCTTTTTGTGTTTGGATCTGGGAATAGCGCATCAGCATCAGGGTCATTCTCATTCCCATTCTGGTTTCTGTGCATCCGATGCCCATCATCACTGTGGAGATGACCATCTCCATGGCCATGCGCATGACCATCACCATGACAAGATTGATGGTAGGTCGAAGCTTCTTCCCGAAGAGTTAGCGGAGGAGGAGGATATGAAACTCTATGGCTTCGGTTTGCCCCATCACCATCACCATGATCACGGTATCGAGGCTGCAGAACTCTCCGGTTTAGGCCTTTGGTTGAATGCATTGGGCTGTTCATTTCTGGTGAGCATGGCTTCTCTTGTTTGTCTGATTATCCTGCCTGTAATTTTTGTACAAGGGAAACCATCAAAGGCTGTTGTTGATTCGTTGGCTTTATTTGGGGCAGGAGCTATGTTGGGGGATGCATTTCTTCACCAATTACCACATGCTTTTGGTGGAGAACACTCTCATTCTCATGGTGACCATGGAGATCATGACCATCATGCTAGTTCTGGACATGGTCATTCACATTCTTTAGCCGATCTTTCTATAGGAATATCCATCCTTGCTGGAATTGTGCTCTTTCTTCTTGTGGAGAAGTTAGTGAGGTATGTTGAAGAAAACTCAGGAGGAGCTAATTCATGGACGCATGGACACCACCACCATAACCACAATAGCAAGAAAAAATTGAAAGGTGATAACAGTTCTAGTGCCAACTTGCAGTCAGAATCTAATAATGCAAAAGAAGAGAGATTGATAGATGAGATAAAAGAAGATGATCAAGTGTCATGTGACTCCTTGAAGGGAGATAATCCATCTCAATCTGAAACCTCACTCAGAAAGAGAATTGGAAGCAATGTGACCAAAGGTGATCCGGACACTAATACTGTAGATAGCGCCACATATAATGTAAAATCTTCAAATGTTAAGGAACCAGTTATATCACCAACAAGTCTTGTGTTTGGTTATCTCAATCTTTTCTCTGACGGAGTGCATAACTTCACTGATGGAATGGCTTTAGGAAGTGCATTCTTGCTTTATGGATCTGTTGGTGGCTGGTCTAGAACTCTGTTTTTGCTTGCACATGAGCTTCCTCAAGAGAGGGTTCCTAAAAAGACTTCATCTGGTGGCATTTATGCTCATATGTCTTCATCGATGTACATTCCAGATCGGTGATTTTGGCATTCTGATAAGATCTGGTTTCAGCATACCAAAAGCGTTGTTCTTCAACTTTCTGTCAGCACTTGTGGCACTTGCGGGGACTGCATTGGCTCTGCTGTGGGGGAAGGATCCTGGACAGTCATCTTTGATTGAGGGATTTACAGCAGGTGGATTTATATACATCGCAATAGCGGGAGTACTTGCAGAAATGAATAACAGTGGGAATACAACATTAAGAAATACTGTTGTCCAAATAATCTCCCTGACCATGGGCATGGCTGTTGCCCTTGGTATTTCCCTTGTAGAATGAATGAAATGTGGTCTCTTTAGGACTTGCATGTCTTGATTCCTGATTTGCCAATTATTTCACAAAAATATGCCAACCAGTTTACAAATGTTCTCTTTATATTTTTGCTTTATGCTAAACGGTGAACCCAGAAAAGCTTGTAGGGAAAGGGGAATTGATAGAAAATGATGGATCAAACAGAATGGTCAGGCTTTAACACCAAATGATTCCTTACTCCCTAACAGAGTGAACTTGGTACAGTACATGTTTTTTCTTTTCGTCTTTAATACTAACCTAGCACAAGCCGTTTTCTTTTTGTCAAAACTTTGTATTTTGTAACATTTTTCTCTCTTTTGAGCTGTATAGCAGTCAAAATGGTTTCCTCTTTCTGATGCACGTAAAATGAAGACACTGATTGTGTCTGATTGATTTT
>Glyma05g26820.1 sequence type=CDS gene model=Glyma05g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGGGTAGAAAAAAGAGTGTGCAATTAGCATTTTTGCTTCTCCTCTTTTTGTGTTTGGATCTGGGAATAGCGCATCAGCATCAGGGTCATTCTCATTCCCATTCTGGTTTCTGTGCATCCGATGCCCATCATCACTGTGGAGATGACCATCTCCATGGCCATGCGCATGACCATCACCATGACAAGATTGATGGTAGGTCGAAGCTTCTTCCCGAAGAGTTAGCGGAGGAGGAGGATATGAAACTCTATGGCTTCGGTTTGCCCCATCACCATCACCATGATCACGGTATCGAGGCTGCAGAACTCTCCGGTTTAGGCCTTTGGTTGAATGCATTGGGCTGTTCATTTCTGGTGAGCATGGCTTCTCTTGTTTGTCTGATTATCCTGCCTGTAATTTTTGTACAAGGGAAACCATCAAAGGCTGTTGTTGATTCGTTGGCTTTATTTGGGGCAGGAGCTATGTTGGGGGATGCATTTCTTCACCAATTACCACATGCTTTTGGTGGAGAACACTCTCATTCTCATGGTGACCATGGAGATCATGACCATCATGCTAGTTCTGGACATGGTCATTCACATTCTTTAGCCGATCTTTCTATAGGAATATCCATCCTTGCTGGAATTGTGCTCTTTCTTCTTGTGGAGAAGTTAGTGAGGTATGTTGAAGAAAACTCAGGAGGAGCTAATTCATGGACGCATGGACACCACCACCATAACCACAATAGCAAGAAAAAATTGAAAGGTGATAACAGTTCTAGTGCCAACTTGCAGTCAGAATCTAATAATGCAAAAGAAGAGAGATTGATAGATGAGATAAAAGAAGATGATCAAGTGTCATGTGACTCCTTGAAGGGAGATAATCCATCTCAATCTGAAACCTCACTCAGAAAGAGAATTGGAAGCAATGTGACCAAAGGTGATCCGGACACTAATACTGTAGATAGCGCCACATATAATGTAAAATCTTCAAATGTTAAGGAACCAGTTATATCACCAACAAGTCTTGTGTTTGGTTATCTCAATCTTTTCTCTGACGGAGTGCATAACTTCACTGATGGAATGGCTTTAGGAAGTGCATTCTTGCTTTATGGATCTGTTGGTGGCTGGTCTAGAACTCTGTTTTTGCTTGCACATGAGCTTCCTCAAGAGATCGGTGATTTTGGCATTCTGATAAGATCTGGTTTCAGCATACCAAAAGCGTTGTTCTTCAACTTTCTGTCAGCACTTGTGGCACTTGCGGGGACTGCATTGGCTCTGCTGTGGGGGAAGGATCCTGGACAGTCATCTTTGATTGAGGGATTTACAGCAGGTGGATTTATATACATCGCAATAGCGGGAGTACTTGCAGAAATGAATAACAGTGGGAATACAACATTAAGAAATACTGTTGTCCAAATAATCTCCCTGACCATGGGCATGGCTGTTGCCCTTGGTATTTCCCTTGTAGAATGA >Glyma05g26820.2 sequence type=CDS gene model=Glyma05g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGGGTAGAAAAAAGAGTGTGCAATTAGCATTTTTGCTTCTCCTCTTTTTGTGTTTGGATCTGGGAATAGCGCATCAGCATCAGGGTCATTCTCATTCCCATTCTGGTTTCTGTGCATCCGATGCCCATCATCACTGTGGAGATGACCATCTCCATGGCCATGCGCATGACCATCACCATGACAAGATTGATGGTAGGTCGAAGCTTCTTCCCGAAGAGTTAGCGGAGGAGGAGGATATGAAACTCTATGGCTTCGGTTTGCCCCATCACCATCACCATGATCACGGTATCGAGGCTGCAGAACTCTCCGGTTTAGGCCTTTGGTTGAATGCATTGGGCTGTTCATTTCTGGTGAGCATGGCTTCTCTTGTTTGTCTGATTATCCTGCCTGTAATTTTTGTACAAGGGAAACCATCAAAGGCTGTTGTTGATTCGTTGGCTTTATTTGGGGCAGGAGCTATGTTGGGGGATGCATTTCTTCACCAATTACCACATGCTTTTGGTGGAGAACACTCTCATTCTCATGGTGACCATGGAGATCATGACCATCATGCTAGTTCTGGACATGGTCATTCACATTCTTTAGCCGATCTTTCTATAGGAATATCCATCCTTGCTGGAATTGTGCTCTTTCTTCTTGTGGAGAAGTTAGTGAGGTATGTTGAAGAAAACTCAGGAGGAGCTAATTCATGGACGCATGGACACCACCACCATAACCACAATAGCAAGAAAAAATTGAAAGGTGATAACAGTTCTAGTGCCAACTTGCAGTCAGAATCTAATAATGCAAAAGAAGAGAGATTGATAGATGAGATAAAAGAAGATGATCAAGTGTCATGTGACTCCTTGAAGGGAGATAATCCATCTCAATCTGAAACCTCACTCAGAAAGAGAATTGGAAGCAATGTGACCAAAGGTGATCCGGACACTAATACTGTAGATAGCGCCACATATAATGTAAAATCTTCAAATGTTAAGGAACCAGTTATATCACCAACAAGTCTTGTGTTTGGTTATCTCAATCTTTTCTCTGACGGAGTGCATAACTTCACTGATGGAATGGCTTTAGGAAGTGCATTCTTGCTTTATGGATCTGTTGGTGGCTGGTCTAGAACTCTGTTTTTGCTTGCACATGAGCTTCCTCAAGAGAGGGTTCCTAAAAAGACTTCATCTGGTGGCATTTATGCTCATATGTCTTCATCGATGTACATTCCAGATCGGTGA
>Glyma05g26820.1 sequence type=predicted peptide gene model=Glyma05g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALGRKKSVQLAFLLLLFLCLDLGIAHQHQGHSHSHSGFCASDAHHHCGDDHLHGHAHDHHHDKIDGRSKLLPEELAEEEDMKLYGFGLPHHHHHDHGIEAAELSGLGLWLNALGCSFLVSMASLVCLIILPVIFVQGKPSKAVVDSLALFGAGAMLGDAFLHQLPHAFGGEHSHSHGDHGDHDHHASSGHGHSHSLADLSIGISILAGIVLFLLVEKLVRYVEENSGGANSWTHGHHHHNHNSKKKLKGDNSSSANLQSESNNAKEERLIDEIKEDDQVSCDSLKGDNPSQSETSLRKRIGSNVTKGDPDTNTVDSATYNVKSSNVKEPVISPTSLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHELPQEIGDFGILIRSGFSIPKALFFNFLSALVALAGTALALLWGKDPGQSSLIEGFTAGGFIYIAIAGVLAEMNNSGNTTLRNTVVQIISLTMGMAVALGISLVE* >Glyma05g26820.2 sequence type=predicted peptide gene model=Glyma05g26820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALGRKKSVQLAFLLLLFLCLDLGIAHQHQGHSHSHSGFCASDAHHHCGDDHLHGHAHDHHHDKIDGRSKLLPEELAEEEDMKLYGFGLPHHHHHDHGIEAAELSGLGLWLNALGCSFLVSMASLVCLIILPVIFVQGKPSKAVVDSLALFGAGAMLGDAFLHQLPHAFGGEHSHSHGDHGDHDHHASSGHGHSHSLADLSIGISILAGIVLFLLVEKLVRYVEENSGGANSWTHGHHHHNHNSKKKLKGDNSSSANLQSESNNAKEERLIDEIKEDDQVSCDSLKGDNPSQSETSLRKRIGSNVTKGDPDTNTVDSATYNVKSSNVKEPVISPTSLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHELPQERVPKKTSSGGIYAHMSSSMYIPDR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
