Glyma05g26800 - SoyBase

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Report for Sequence Feature Glyma05g26800

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32721666
stop:	32723642
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25240	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS/GAT family protein \| chr1:8845231-8846361 FORWARD LENGTH=376	SoyBase	E_val: 4.00E-113	ISS
GO:0048268	GO-bp	Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0030118	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0005545	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
PTHR22951	Panther	CLATHRIN ASSEMBLY PROTEIN	JGI		ISS
PTHR22951:SF7	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07651	PFAM	ANTH domain	JGI		ISS
UniRef100_B9S7D9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9S7D9_RICCO	SoyBase	E_val: 9.00E-124	ISS
UniRef100_UPI00023393DA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023393DA related cluster n=1 Tax=unknown RepID=UPI00023393DA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26800

Paralog	Evidence	Comments
Glyma08g09790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g137200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26800

Limit To All Plant Sequences

>Glyma05g26800.1   sequence type=CDS   gene model=Glyma05g26800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGTATTTAAAAGAGCCAGTGGAGCCATCAAGGACAGGAACAGCATATGGGTTGCGAAATTCTCACCAAAGGGTCCATTCCACAACCCTGATTTAGAAACCGTGATAATCAAAGCCACAAGCCACGACGATAAGCACATAGATTCAAAGAACGTGCAAAGAGTGTTCCAATGGCTACGAACCTCGCCCTTGTACCTGAAGCCTCTCGTGTGGATCCTCTCCATGCGCATGCAAAAGACTCGAAGCTGGGTTGTGGCGCTCAAAGGCTTGATGCTCATCCACGGCGTTTTCTGCATTGACATTCCCGTGGTGCAACGCATGGGGAGGTTACCCTTTGACCTTTCAAACTTCTCCGATGGTCATTTGAGCCCCGCTAAGGCTTGGAGCTTCAACGCTTTCGTTCGCGCTTATTTTGCTTATTTGGATAAGAGGTCTGCGTTTGCGTCCTCCGAGACGAAGCAGAAGAATGTTAGTAATAAAATGAAGGAGGTGGATGAGACTTTGATGGAAGAGCTTGAAAAGCTGCAAAAGTTGCAAGGGATGATTGACATGCTTCTCCAAATTAGGCCAAAGAATGAGAACTTGAACGTTGGTTTGATTCTTGAGGCTATGGATTGTGTCATAGTCGAGGTTTTCGGTGTGTATAGTAAGTTTTGCAACAAGATTGCAAAAGTTTTGTTGAGAATATATGAGGTTGGTGGGAAGATGGAAGCGAGTATTGGCCTCAAGGTTCTTCAGAAAGCATCGATTCAAGTGGAGGAGATGTCTTTGTTCTTTGACTTTTGCAAGGATATTGGGGTCCTCAATGCCTCTCAGTGCCCTAAGATTGATAGAATATCTCGGGAAGATATTCAAGATCTTGAGAGGATAATCAGTGGTGCTTCTTCCAAGAAGGGTTGTGGTGTTGTGGGAAATGATGAGGATAATAATAAGGCCATTGTGGTGAGAGATTGTTCTTCCACTGCATCGGTTTCACAGCAGAAGGGGTCAGAGAATGGTTTGATGACTGTGATCACGCAACAATGGGAGGTGTTTGATGATGATCATATAATGGTTGGTGCTAAAGGAATGGATAATGTGTCTAATGGTGATAAGGTTATAATTGGCACCACAACCAACCCTTTTGAGGAATCATATGGCATCGTACCTTATGTACCTGCTCACTATCAATCTCTTCCTGATCTAATTAGTTGGTAG

Predicted protein sequences of Glyma05g26800

Limit To All Plant Sequences

>Glyma05g26800.1   sequence type=predicted peptide   gene model=Glyma05g26800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVFKRASGAIKDRNSIWVAKFSPKGPFHNPDLETVIIKATSHDDKHIDSKNVQRVFQWLRTSPLYLKPLVWILSMRMQKTRSWVVALKGLMLIHGVFCIDIPVVQRMGRLPFDLSNFSDGHLSPAKAWSFNAFVRAYFAYLDKRSAFASSETKQKNVSNKMKEVDETLMEELEKLQKLQGMIDMLLQIRPKNENLNVGLILEAMDCVIVEVFGVYSKFCNKIAKVLLRIYEVGGKMEASIGLKVLQKASIQVEEMSLFFDFCKDIGVLNASQCPKIDRISREDIQDLERIISGASSKKGCGVVGNDEDNNKAIVVRDCSSTASVSQQKGSENGLMTVITQQWEVFDDDHIMVGAKGMDNVSNGDKVIIGTTTNPFEESYGIVPYVPAHYQSLPDLISW*

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