SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01930 | AT | Annotation by Michelle Graham. TAIR10: basic pentacysteine1 | chr2:427358-428209 REVERSE LENGTH=283 | SoyBase | E_val: 7.00E-106 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0050793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of developmental process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PF06217 | PFAM | GAGA binding protein-like family | JGI | ISS | |
| UniRef100_C6TF36 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TF36_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_H1ZNA1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GAGA-binding transcriptional activator n=1 Tax=Lotus japonicus RepID=H1ZNA1_LOTJA | SoyBase | E_val: 5.00E-173 | ISS |
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Glyma05g26790 not represented in the dataset |
Glyma05g26790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g09780 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g137100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g26790.2 sequence type=transcript gene model=Glyma05g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAAAAAGTCCAAAAAATACAAATTCATATATATTGTTTAAAACGAGCGTGGCAAAGTATATTATATATGCCCATACATACACTATTTTTTAGCACCGTTTCTCTCTCCCATTTCCTCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCGCCTTTCTCTTTCTCTCTCTTTCAGATTTCTGTCTCTCTCATCTTTCTCTCTCCGGAAGGGCAAACCCTAAAGACCGTTTGCACCCACCAGTAAGGATCGTAATGGCGTTCAGATCGTGGGGTTTTCGTTTTGCGGCGATTAGATCGATTGTCATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGGGGGGGACATCTTGGTCTTCAGCTCATGCCTGGAATAACTGAACGAGACACAAAGCCATTTTTGCCTGGTCGTGATCCGGCTATGCTAATGGGTGCAAATGGAACTTTTCACCCACGAGATTGCGCTGTTTCAGAGGCACCAATGCCATTGAACTATGTCAGAGATAATTGGATAAACCCGAGAGATAGGTTTTTTAATATGCAGCAGCCCACAAATCCTAGTTATGCTGTTCTTCCAGAGACATCAGGAGCTCCTAACTTGCAAATTATACAGCCACCTGATTCGTCAAGTGACGAGAAAGTGGATAGAGTCGAAGAGGTAGCTGTCAAAAAGGAAGGTGGCCAGTCAAAGAAAAGGCAAACTAAGGGTGCTCTGTCGACTCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATGGCAATGCTCCAGTTCAACGTGCGAAGCCACCGAAGAAGACTATGGAGCTTGTGATTAATGGAATTGATATGGACATTTCTGGTCTACCTACTCCGGTTTGTTCATGCACTGGGGCTCCTCAGCAGTGTTATAGGTGGGGCTGTGGAGGTTGGCAATCGGCTTGTTGCACCACAAATGTGTCAATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAAAAGGTTTTAGAGAAACTTGCTGCTGAAGGTTATAACTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCCAGACACGGCACCAACAAGTTTGTCACTATCAGGTAGATAGGTGCTGTTGAGACGCATGACATTTGGTCTGTTTCACCTGTATATACACCTGTGTGGTCTTTCACACAGATGTTGAGTTATTTGTTATCCAAGATTTTTCTGTTGTGGTACTTCTACCTAAAATTTGGATATTCCGGTTCTTTTGTTCTTTTTCCCTCTTCGGCTTTTATGTGATAAGGGACAACCATGTTGTATGGCATCAACATTTATGTAGATGAGTTATAACTAGATAGACTAGCTTTGGATAATTCTCCTTCACATTTTAATTTAAAATTGTTAAGATTTTTCAATGCTATGATTTTTTGTGAATTAACTTTTCATCATTCCTTTGGCTTATTGGTTTGTCAGTTACACATTGCCTTTA >Glyma05g26790.3 sequence type=transcript gene model=Glyma05g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAAAAAGTCCAAAAAATACAAATTCATATATATTGTTTAAAACGAGCGTGGCAAAGTATATTATATATGCCCATACATACACTATTTTTTAGCACCGTTTCTCTCTCCCATTTCCTCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCGCCTTTCTCTTTCTCTCTCTTTCAGATTTCTGTCTCTCTCATCTTTCTCTCTCCGGAAGGGCAAACCCTAAAGACCGTTTGCACCCACCAGTAAGTTTTCTCTCTCCTATCTCTTCTCTCTCTCTCTCTCTCTGCGCTTTCTCCTTCTCTCTCTCTCTCCCTCCCTCTCTCCCCTTCTCTCCCTCTCTTTCCTTAAAAATTTGAAATTGATGGGGTCCTTCTTCTACCGCTGAGCCTCAATATAAATCATTTGTGCTGTGAATTTGTTTTTCTTCGCCATAACGAGCGAGATCTAGTCCCAAATTTTGGAACCCTAAAATGGGAATTGGGGATCTGCACGCCGAGCTCGTCTTTTGTGTGTGCTGTGTTTGGTTTGTGAGGAAATGTAGGGATCGTAATGGCGTTCAGATCGTGGGGTTTTCGTTTTGCGGCGATTAGATCGATTGTCATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGGGGGGGACATCTTGGTCTTCAGCTCATGCCTGGAATAACTGAACGAGACACAAAGCCATTTTTGCCTGGTCGTGATCCGGCTATGCTAATGGGTGCAAATGGAACTTTTCACCCACGAGATTGCGCTGTTTCAGAGGCACCAATGCCATTGAACTATGTCAGAGATAATTGGATAAACCCGAGAGATAGGTTTTTTAATATGCAGCAGCCCACAAATCCTAGTTATGCTGTTCTTCCAGAGACATCAGGAGCTCCTAACTTGCAAATTATACAGCCACCTGATTCGTCAAGTGACGAGAAAGTGGATAGAGTCGAAGAGGTAGCTGTCAAAAAGGAAGGTGGCCAGTCAAAGAAAAGGCAAACTAAGGGTGCTCTGTCGACTCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATGGCAATGCTCCAGTTCAACGTGCGAAGCCACCGAAGAAGACTATGGAGCTTGTGATTAATGGAATTGATATGGACATTTCTGGTCTACCTACTCCGGTTTGTTCATGCACTGGGGCTCCTCAGCAGTGTTATAGGTGGGGCTGTGGAGGTTGGCAATCGGCTTGTTGCACCACAAATGTGTCAATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAAAAGGTTTTAGAGAAACTTGCTGCTGAAGGTTATAACTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCCAGACACGGCACCAACAAGTTTGTCACTATCAGGTAGATAGGTGCTGTTGAGACGCATGACATTTGGTCTGTTTCACCTGTATATACACCTGTGTGGTCTTTCACACAGATGTTGAGTTATTTGTTATCCAAGATTTTTCTGTTGTGGTACTTCTACCTAAAATTTGGATATTCCGGTTCTTTTGTTCTTTTTCCCTCTTCGGCTTTTATGTGATAAGGGACAACCATGTTGTATGGCATCAACATTTATGTAGATGAGTTATAACTAGATAGACTAGCTTTGGATAATTCTCCTTCACATTTTAATTTAAAATTGTTAAGATTTTTCAATGCTATGATTTTTTGTGAATTAACTTTTCATCATTCCTTTGGCTTATTGGTTTGTCAGTTACACATTGCCTTTA
>Glyma05g26790.1 sequence type=CDS gene model=Glyma05g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGGGGGGGACATCTTGGTCTTCAGCTCATGCCTGGAATAACTGAACGAGACACAAAGCCATTTTTGCCTGGTCGTGATCCGGCTATGCTAATGGGTGCAAATGGAACTTTTCACCCACGAGATTGCGCTGTTTCAGAGGCACCAATGCCATTGAACTATGTCAGAGATAATTGGATAAACCCGAGAGATAGGTTTTTTAATATGCAGCAGCCCACAAATCCTAGTTATGCTGTTCTTCCAGAGACATCAGGAGCTCCTAACTTGCAAATTATACAGCCACCTGATTCGTCAAGTGACGAGAAAGTGGATAGAGTCGAAGAGGTAGCTGTCAAAAAGGAAGGTGGCCAGTCAAAGAAAAGGCAAACTAAGGGTGCTCTGTCGACTCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATGGCAATGCTCCAGTTCAACGTGCGAAGCCACCGAAGAAGACTATGGAGCTTGTGATTAATGGAATTGATATGGACATTTCTGGTCTACCTACTCCGGTTTGTTCATGCACTGGGGCTCCTCAGCAGTGTTATAGGTGGGGCTGTGGAGGTTGGCAATCGGCTTGTTGCACCACAAATGTGTCAATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAAAAGGTTTTAGAGAAACTTGCTGCTGAAGGTTATAACTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCCAGACACGGCACCAACAAGTTTGTCACTATCAGGTAG >Glyma05g26790.2 sequence type=CDS gene model=Glyma05g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTCAGATCGTGGGGTTTTCGTTTTGCGGCGATTAGATCGATTGTCATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGGGGGGGACATCTTGGTCTTCAGCTCATGCCTGGAATAACTGAACGAGACACAAAGCCATTTTTGCCTGGTCGTGATCCGGCTATGCTAATGGGTGCAAATGGAACTTTTCACCCACGAGATTGCGCTGTTTCAGAGGCACCAATGCCATTGAACTATGTCAGAGATAATTGGATAAACCCGAGAGATAGGTTTTTTAATATGCAGCAGCCCACAAATCCTAGTTATGCTGTTCTTCCAGAGACATCAGGAGCTCCTAACTTGCAAATTATACAGCCACCTGATTCGTCAAGTGACGAGAAAGTGGATAGAGTCGAAGAGGTAGCTGTCAAAAAGGAAGGTGGCCAGTCAAAGAAAAGGCAAACTAAGGGTGCTCTGTCGACTCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATGGCAATGCTCCAGTTCAACGTGCGAAGCCACCGAAGAAGACTATGGAGCTTGTGATTAATGGAATTGATATGGACATTTCTGGTCTACCTACTCCGGTTTGTTCATGCACTGGGGCTCCTCAGCAGTGTTATAGGTGGGGCTGTGGAGGTTGGCAATCGGCTTGTTGCACCACAAATGTGTCAATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAAAAGGTTTTAGAGAAACTTGCTGCTGAAGGTTATAACTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCCAGACACGGCACCAACAAGTTTGTCACTATCAGGTAG >Glyma05g26790.3 sequence type=CDS gene model=Glyma05g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTCAGATCGTGGGGTTTTCGTTTTGCGGCGATTAGATCGATTGTCATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGGGGGGGACATCTTGGTCTTCAGCTCATGCCTGGAATAACTGAACGAGACACAAAGCCATTTTTGCCTGGTCGTGATCCGGCTATGCTAATGGGTGCAAATGGAACTTTTCACCCACGAGATTGCGCTGTTTCAGAGGCACCAATGCCATTGAACTATGTCAGAGATAATTGGATAAACCCGAGAGATAGGTTTTTTAATATGCAGCAGCCCACAAATCCTAGTTATGCTGTTCTTCCAGAGACATCAGGAGCTCCTAACTTGCAAATTATACAGCCACCTGATTCGTCAAGTGACGAGAAAGTGGATAGAGTCGAAGAGGTAGCTGTCAAAAAGGAAGGTGGCCAGTCAAAGAAAAGGCAAACTAAGGGTGCTCTGTCGACTCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATGGCAATGCTCCAGTTCAACGTGCGAAGCCACCGAAGAAGACTATGGAGCTTGTGATTAATGGAATTGATATGGACATTTCTGGTCTACCTACTCCGGTTTGTTCATGCACTGGGGCTCCTCAGCAGTGTTATAGGTGGGGCTGTGGAGGTTGGCAATCGGCTTGTTGCACCACAAATGTGTCAATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAAAAGGTTTTAGAGAAACTTGCTGCTGAAGGTTATAACTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCCAGACACGGCACCAACAAGTTTGTCACTATCAGGTAG
>Glyma05g26790.1 sequence type=predicted peptide gene model=Glyma05g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDDVLNMPNWGYYEPFRGGHLGLQLMPGITERDTKPFLPGRDPAMLMGANGTFHPRDCAVSEAPMPLNYVRDNWINPRDRFFNMQQPTNPSYAVLPETSGAPNLQIIQPPDSSSDEKVDRVEEVAVKKEGGQSKKRQTKGALSTPKAKKPRKPKDNGNAPVQRAKPPKKTMELVINGIDMDISGLPTPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR* >Glyma05g26790.2 sequence type=predicted peptide gene model=Glyma05g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFRSWGFRFAAIRSIVMDDDVLNMPNWGYYEPFRGGHLGLQLMPGITERDTKPFLPGRDPAMLMGANGTFHPRDCAVSEAPMPLNYVRDNWINPRDRFFNMQQPTNPSYAVLPETSGAPNLQIIQPPDSSSDEKVDRVEEVAVKKEGGQSKKRQTKGALSTPKAKKPRKPKDNGNAPVQRAKPPKKTMELVINGIDMDISGLPTPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR* >Glyma05g26790.3 sequence type=predicted peptide gene model=Glyma05g26790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFRSWGFRFAAIRSIVMDDDVLNMPNWGYYEPFRGGHLGLQLMPGITERDTKPFLPGRDPAMLMGANGTFHPRDCAVSEAPMPLNYVRDNWINPRDRFFNMQQPTNPSYAVLPETSGAPNLQIIQPPDSSSDEKVDRVEEVAVKKEGGQSKKRQTKGALSTPKAKKPRKPKDNGNAPVQRAKPPKKTMELVINGIDMDISGLPTPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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