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Report for Sequence Feature Glyma05g26771

Feature Type:gene_model
Chromosome:Gm05
Start:32682590
stop:32686150
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g26771
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01950AT Annotation by Michelle Graham. TAIR10: BRI1-like 2 | chr2:440805-444236 REVERSE LENGTH=1143 SoyBaseE_val: 0ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0009734GO-bp Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway SoyBaseN/AISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010233GO-bp Annotation by Michelle Graham. GO Biological Process: phloem transport SoyBaseN/AISS
GO:0010305GO-bp Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004675GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF924Panther JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_B9S7D4UniRef Annotation by Michelle Graham. Best UniRef hit: Serine/threonine-protein kinase bri1, putative n=1 Tax=Ricinus communis RepID=B9S7D4_RICCO SoyBaseE_val: 0ISS
UniRef100_B9S7D4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase bri1, putative n=1 Tax=Ricinus communis RepID=B9S7D4_RICCO SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g26771
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g26771 not represented in the dataset
Glyma05g26771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26771
ParalogEvidenceComments
Glyma08g09750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26771 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g136900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g26771
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g26771
>Glyma05g26771.1   sequence type=CDS   gene model=Glyma05g26771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGCCACAACAAATTCTCATCATACTCACCACTCTCACAATGTCTTTCCTCTCTCCTTTCTACACACATTAATCTATACTTCTCTGCAACATCTTTGCTGGTCTCTCTCTTCCCAGACCTGTGTTCTGTTCTGGCTTTGTACAAGGCTTGTTTTCTCAATGGAGAACAACCATGTTCAGTTTTTGCCTCTTCTCACCGTGACACTTCTTCTTGTGATCACTGTTTTGTTTCCTGTGACTGAGGGTGCAGCAGTTTCCTCCATCAAGACTGATGCACAGGCTCTTCTCATGTTCAAAAGGATGATTCAGAAGGATCCAAGTGGAGTTTTGTCAGGGTGGAAGCTGAATAGGAATCCATGCAGCTGGTATGGAGTCTCTTGCACCCTTGGAAGAGTTACTCAGCTTGATATTAGTGGGAGTAATGACCTTGCTGGGACTATATCTCTTGACCCTTTGTCTTCTTTAGATATGTTATCTGTTCTGAAAATGTCATTGAATTCATTTTCTGTAAATTCTACCTCTTTGCTTAATCTCCCATATAGTTTGACACAGCTTGATCTATCCTTCGGTGGAGTCACAGGTCCTGTCCCTGAGAACCTGTTCTCCAAGTGTCCAAATCTTGTTGTTGTGAATCTTTCTTACAACAACTTGACAGGCCCTATTCCTGAAAATTTCTTTCAAAATTCTGATAAACTGCAGGTCCTTGACCTCTCTTACAACAACCTGTCAGGGCCAATTTTTGGCCTGAAAATGGAGTGCATTTCCTTGTTGCAACTTGATCTATCTGGAAACCGTTTATCAGACTCAATTCCACTCTCTTTGTCAAACTGCACCAGCCTTAAAATTTTGAATTTAGCCAACAATATGGTTTCTGGGGATATCCCCAAAGCTTTTGGTCAGCTAAACAAACTACAGACTTTGGATCTTTCACACAACCAACTCAATGGCTGGATCCCTTCTGAATTTGGAAATGCATGTGCTTCCCTTTTGGAGCTCAAACTTTCTTTCAACAACATCTCAGGCTCAATCCCACCTAGTTTCTCTTCTTGCAGTTGGCTGCAACTTCTTGACATATCTAACAACAATATGTCAGGGCAGTTACCAGATGCAATCTTTCAGAACCTTGGATCATTACAGGAACTGAGGCTGGGAAATAATGCTATCACAGGTCAATTTCCATCTTCACTATCTTCCTGCAAAAAGTTGAAGATTGTGGATTTCAGCTCAAATAAAATTTATGGATCTATCCCCAGAGATTTATGTCCAGGAGCAGTCTCACTTGAGGAGCTGAGAATGCCAGACAATCTCATTACAGGAGAAATCCCAGCTGAACTGTCAAAGTGCTCAAAGCTGAAGACACTTGATTTTAGTCTGAACTATCTCAATGGTACAATTCCTGATGAGCTTGGAGAACTCGAAAATCTTGAGCAGCTAATAGCATGGTTCAATAGCTTGGAAGGAAGCATTCCACCAAAGTTGGGCCAGTGCAAGAATCTCAAGGATCTCATACTGAATAATAATCACCTCACAGGTGGAATTCCAATTGAGTTGTTCAATTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGAACTCAGTTGGGAAATACCGCGCAAGTTTGGCCTCTTGACAAGGTTAGCAGTCCTGCAGCTTGGAAACAACAGCTTGACTGGGGAGATACCATCAGAGCTAGCAAATTGCAGAAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTCCAAGACTTGGCAGGCAGCTAGGAGCAAAATCCTTGTTTGGGATCCTTTCAGGAAACACTTTGGTGTTTGTAAGAAATGTTGGAAACTCATGTAAAGGAGTTGGAGGTTTGCTAGAATTCTCTGGTATCCGACCTGAAAGACTCTTGCAGGTCCCAACATTGAGGACTTGTGACTTCGCAAGACTCTATTCTGGTCCTGTCCTCAGCCAGTTCACCAAGTACCAGACTCTGGAGTATCTTGATCTTTCCTATAACGAGCTTCGCGGAAAAATCCCAGATGAATTTGGAGATATGGTGGCTTTACAGGTTCTTGAATTATCTCACAATCAGCTATCTGGAGAAATCCCTTCATCACTTGGCCAGCTCAAAAATTTGGGTGTGTTTGATGCATCACACAATAGACTGCAGGGTCATATCCCAGACTCATTCTCAAACCTCTCATTCTTAGTGCAAATTGATCTATCTAACAATGAGTTAACAGGGCAGATTCCATCTAGGGGACAACTGAGTACACTTCCAGCTTCCCAGTATGCGAACAATCCAGGACTTTGTGGTGTACCATTGCCTGATTGCAAGAATGACAACAGCCAAACCACAACAAATCCAAGTGATGATAGGCAGCTGAGGAAGCTCAAGTTCTCACAGTTGATTGAAGCAACTAATGGATTCTCAGCAGCGAGCCTCATTGGGTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTCAAAGACGGTTCAAGTGTCGCCATAAAGAAGCTCATTCGACTGAGCTGCCAGGGCGATCGAGAATTCATGGCAGAGATGGAAACCTTAGGGAAGATCAAGCACAGAAATCTTGTCCCTTTGTTGGGGTACTGCAAAGTAGGGGAAGAGAGGCTCCTTGTGTATGAGTACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAATCAAGACGCGTGATCGACGAATTTTGACATGGGAAGAAAGGAAGAAGATTGCAAGAGGTGCTGCTAAAGGACTTTGTTTCCTGCACCACAATTGCATCCCTCACATCATACACAGAGACATGAAATCAAGCAACGTGCTACTTGACAATGAAATGGAGTCCAGGGTCTCAGATTTTGGCATGGCAAGATTAATAAGTGCCCTTGACACACATCTTAGTGTGAGCACGCTAGCAGGAACACCTGGATATGTTCCTCCAGAGTACTACCAAAGTTTCAGGTGCACTGTCAAGGGAGATGTCTATTCATTTGGAGTTGTGATGTTGGAACTGCTGAGCGGGAAACGCCCGACTGATAAGGAGGACTTTGGTGACACCAACTTGGTGGGGTGGGCGAAGATAAAGGTCCGCGAAGGGAAGCAAATGGAAGTAATTGACAATGACTTGCTTTTGGCCACTCAAGGAACTGATGAAGCAGAAGCCAAAGAAGTGAAGGAGATGATAAGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCTATGCTGAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA
Predicted protein sequences of Glyma05g26771
>Glyma05g26771.1   sequence type=predicted peptide   gene model=Glyma05g26771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LATTNSHHTHHSHNVFPLSFLHTLIYTSLQHLCWSLSSQTCVLFWLCTRLVFSMENNHVQFLPLLTVTLLLVITVLFPVTEGAAVSSIKTDAQALLMFKRMIQKDPSGVLSGWKLNRNPCSWYGVSCTLGRVTQLDISGSNDLAGTISLDPLSSLDMLSVLKMSLNSFSVNSTSLLNLPYSLTQLDLSFGGVTGPVPENLFSKCPNLVVVNLSYNNLTGPIPENFFQNSDKLQVLDLSYNNLSGPIFGLKMECISLLQLDLSGNRLSDSIPLSLSNCTSLKILNLANNMVSGDIPKAFGQLNKLQTLDLSHNQLNGWIPSEFGNACASLLELKLSFNNISGSIPPSFSSCSWLQLLDISNNNMSGQLPDAIFQNLGSLQELRLGNNAITGQFPSSLSSCKKLKIVDFSSNKIYGSIPRDLCPGAVSLEELRMPDNLITGEIPAELSKCSKLKTLDFSLNYLNGTIPDELGELENLEQLIAWFNSLEGSIPPKLGQCKNLKDLILNNNHLTGGIPIELFNCSNLEWISLTSNELSWEIPRKFGLLTRLAVLQLGNNSLTGEIPSELANCRSLVWLDLNSNKLTGEIPPRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFARLYSGPVLSQFTKYQTLEYLDLSYNELRGKIPDEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKNDNSQTTTNPSDDRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDNEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTVKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKIKVREGKQMEVIDNDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA*






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