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Report for Sequence Feature Glyma05g26750

Feature Type:gene_model
Chromosome:Gm05
Start:32658851
stop:32664653
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g26750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01970AT Annotation by Michelle Graham. TAIR10: Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
KOG1277 KOG Endosomal membrane proteins, EMP70 JGI ISS
PTHR10766Panther TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER JGI ISS
PTHR10766:SF14Panther TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER 1 JGI ISS
PF02990PFAM Endomembrane protein 70 JGI ISS
UniRef100_B9S7D1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9S7D1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1K3B1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3B1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g26750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26750
ParalogEvidenceComments
Glyma08g09740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g136800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g26750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g26750
>Glyma05g26750.1   sequence type=CDS   gene model=Glyma05g26750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGAACGAACGAGAGTGCAGCGGCAATGGGTAGAAGCACTTTGGCTTTGGTTCTCGCGATTCTGATCTCTTTTCAGGGAACCCACGTTAGATCCGATGCCTCCGATCACCGTTACAAGGATGGAGACTCCGTCCCTCTTTACGCCAACAAAGTTGGTCCCTTTCACAACCCCAGTGAAACGTATCGGTACTTTGACCTGCCATTCTGTGTAACAGGTCATGAGAAAGAAAAGACTGAAGCCCTCGGTGAGGTGTTGAATGGCGATCGCCTTGTTAGTGCTCCTTACGAACTTAGTTTCAAGAAGGAGAAAGACTCTAAGGTTGTATGCAAGAGAAAGCTCACAAAGGAGCAAGTTGCTCAGTTCCGAGAAGCAGTTAAGAAGGACTATTATTTCCAGATGTATTATGATGATTTGCCGATCTGGGGATTTATTGGGACGATTGACAAGGAAGGGAAAACTGACCCTAGTGAGTACAAGTATTTTCTTTACAAGCACATTCAGTTTGATATTCTGTACAACAAAGATCGTGTGATTGAAATCAGTGCCCGAATGGATCCTCATTCTGTGGTGGACCTGACTGAGGATAAAGATGTTGATGTTGAGTTCATGTACACTGCAAAATGGAAGGAAACAGATACATCTTTTGAGAAGAGAATGGATAAATACTCTCAGTCTTCTTCTTTGCCACATCACTTGGAGATTCACTGGTTCTCAATCATAAACTCCTGTGTAACAGTTCTTCTTTTGACTGGTTTTCTGGCAACCATTCTCATGCGTGTATTGAAGAATGACTTTATGAAGTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAGACAGGATGGAAATACATTCATGGTGATGTTTTCCGGTTTCCAAAGCACAAGTCTTTCTTTTCAGCAGCCCTTGGTTCTGGTACTCAGTTATTCACACTTACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTGTTTTATCCATATAACCGAGGTGCTTTATTTACTGCACTGGTGGTCATATATGCTCTCACATCTGGCATTGCTGGCTACACTGCTACTTCCTTCTATATTCAACTTGAAGGGACTAATTGGGTTAGGAACTTATTGCTGACAGGATGCCTCTTTTGTGGCCCCCTATTCCTTATGTTCTGTTTCCTTAACACCGTTGCCATTGCTTATAGTGCAACTGCTGCCCTGCCATTTGGCACAATTGTGGTGATAGTCCTAATATGGACATTGGTAACTTCACCATTGCTTGTGTTGGGTGGTATTGCAGGTAAGAATAGCAAAACTGAGTTCCAAGCACCTGTCCGCACTACAAAATATCCCCGAGAGATTCCACCTCTGCCTTGGTACAGGAGTACCATTCCCCAGATGGCAATGGCAGGATTTCTTCCTTTTAGTGCCATCTACATAGAGCTGTACTACATTTTTGCTAGTGTATGGGGCCACCGAATTTATACCATCTACAGCATACTCTTCATTGTCTTCATTATTCTGTTGATTGTCACTGCTTTCATCACTGTGGCTTTGACGTACTTCCAACTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTCTTTCCTTTGTGGTGGATCAACTGGCTTGTTCATCTACGGCTATTGCTTGTATTACTACTATGCACGATCAGATATGTCTGGTTTTATGCAAACTTCGTTCTTCTTCGGTTACATGGCCTGCATCTGCTATGGCTTCTTCCTCATGCTTGGTAGTGTAGGTTTCCGTGCCTCTCTGCTCTTTGTTCGTCACATATACAGGTCCATCAAGTGCGAGTAG
Predicted protein sequences of Glyma05g26750
>Glyma05g26750.1   sequence type=predicted peptide   gene model=Glyma05g26750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRTNESAAAMGRSTLALVLAILISFQGTHVRSDASDHRYKDGDSVPLYANKVGPFHNPSETYRYFDLPFCVTGHEKEKTEALGEVLNGDRLVSAPYELSFKKEKDSKVVCKRKLTKEQVAQFREAVKKDYYFQMYYDDLPIWGFIGTIDKEGKTDPSEYKYFLYKHIQFDILYNKDRVIEISARMDPHSVVDLTEDKDVDVEFMYTAKWKETDTSFEKRMDKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKYIHGDVFRFPKHKSFFSAALGSGTQLFTLTIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYIQLEGTNWVRNLLLTGCLFCGPLFLMFCFLNTVAIAYSATAALPFGTIVVIVLIWTLVTSPLLVLGGIAGKNSKTEFQAPVRTTKYPREIPPLPWYRSTIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYGYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGSVGFRASLLFVRHIYRSIKCE*






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