Glyma05g26700 - SoyBase

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Report for Sequence Feature Glyma05g26700

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32615377
stop:	32616879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19640	AT	Annotation by Michelle Graham. TAIR10: ASH1-related protein 2 \| chr2:8491401-8492597 FORWARD LENGTH=398	SoyBase	E_val: 3.00E-94	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12197	Panther	SET AND MYND DOMAIN CONTAINING	JGI		ISS
PTHR12197:SF90	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_B9GMX2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SET domain protein n=1 Tax=Populus trichocarpa RepID=B9GMX2_POPTR	SoyBase	E_val: 3.00E-114	ISS
UniRef100_I1K3A9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3A9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26700

Paralog	Evidence	Comments
Glyma08g09700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g136500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26700

Limit To All Plant Sequences

>Glyma05g26700.1   sequence type=CDS   gene model=Glyma05g26700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCCAAGTTCCCTATTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTTAAAGCTGGTCAAAGTGTCCTCAGAGACTCTCCCATTCTGCAGTATTCGGCTTTGCCCTTGATCAGGCAGTCCTTGTCATCCTCCTCATCTGCCTCAGCTTCCTGCTTCTGTGATCACTGCTTCAAAACCTTGCCTCCTTTACAGGGAGATTCTTCATCATGCACAGTTTTGTGCCCCAATTGTTGCCACCATTATTTCTGCAGCTCAAAGTGTCTTTCAAAGGCACTGAACAACTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCATCTTAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGCGCCAAGTCCAAGCTAATTTTCTCATTGCTGCCTACAATCTTGCCAATTTCTCCCCTTCAGACTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGAGGAGTCCACCATTGCTGCAGCTCAGTTCCTACACCCCCTTATTAGCCCCCGGAATGAATTTTCTTTAGAACTCACTTCTGCACTTCTTGCCAACGACAAGCTCAATGCCTTTGGCATAATGCAGTCCTTCTCTGAACATGATGACCAGAGATTTGATTACATTGACGCTAATCCACCTGATGACGGCCATAATACTGACTTTATTATTTGGATGATTAATGGTGTTCCTCAAGGCAGGGAGATTTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAGAAGAGATTGATTGAAGACTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGGTAGTGTTGAAGATAATGCTGAGGATGAAGAAGAGGAGGTTATGGATGAGGACCAATGTGAACCTATGGCAGCATCAGACACTGACGATCATCCCCATGAAGATAATAACGATTTTCCACATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGCTGGGGAACTTTAGCTCCTTTATCTCCACAGGAAAACGTTGGTCGTACTGTTACAATTGGAGAACACATTTTGGGACTGAAACCTGTTCTTCAAGTTCTGAAGCCTTATTCCTGGACCTTTTAA

Predicted protein sequences of Glyma05g26700

Limit To All Plant Sequences

>Glyma05g26700.1   sequence type=predicted peptide   gene model=Glyma05g26700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAPSSLLKVEEIQGRGRGMVASQPLKAGQSVLRDSPILQYSALPLIRQSLSSSSSASASCFCDHCFKTLPPLQGDSSSCTVLCPNCCHHYFCSSKCLSKALNNSHSSWVCQALSHLRANSLLLEQPLERQVQANFLIAAYNLANFSPSDFQIMLSLQGSPEESTIAAAQFLHPLISPRNEFSLELTSALLANDKLNAFGIMQSFSEHDDQRFDYIDANPPDDGHNTDFIIWMINGVPQGREICLSYFPVNENYSSRQKRLIEDYGFTCNCDRCNVESNWSDNGSVEDNAEDEEEEVMDEDQCEPMAASDTDDHPHEDNNDFPHAYFFLKYMCDRTNCWGTLAPLSPQENVGRTVTIGEHILGLKPVLQVLKPYSWTF*

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