Glyma05g26670 - SoyBase

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Report for Sequence Feature Glyma05g26670

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32587945
stop:	32593336
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02040	AT	Annotation by Michelle Graham. TAIR10: peptide transporter 2 \| chr2:487542-489707 FORWARD LENGTH=585	SoyBase	E_val: 0	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0010351	GO-bp	Annotation by Michelle Graham. GO Biological Process: lithium ion transport	SoyBase	N/A	ISS
GO:0015833	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptide transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0042938	GO-bp	Annotation by Michelle Graham. GO Biological Process: dipeptide transport	SoyBase	N/A	ISS
GO:0042939	GO-bp	Annotation by Michelle Graham. GO Biological Process: tripeptide transport	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015334	GO-mf	Annotation by Michelle Graham. GO Molecular Function: high affinity oligopeptide transporter activity	SoyBase	N/A	ISS
GO:0042937	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tripeptide transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF37	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_I1K3A6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3A6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XAC3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter 1 n=1 Tax=Vicia faba RepID=Q7XAC3_VICFA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g26670 not represented in the dataset	Glyma05g26670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26670

Paralog	Evidence	Comments
Glyma08g09680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g136200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26670

Limit To All Plant Sequences

>Glyma05g26670.1   sequence type=CDS   gene model=Glyma05g26670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCCCAGAAAATCAATTGTCGCTCGCAGAAGAGGCTCTTCTTCAGGATGATGAGAGCAAACAATACACAGGAGATGGATCGGTTGACTTTAAAGGGAGGCCTGTTCTTAAGCGGAATACTGGCAACTGGAAAGCTTGCCCATTTATCTTAGGCAACGAGTGCTGCGAACGTTTGGCGTACTATGGCATTGCGACAAATCTTGTTACCTATCTTACCCAGAAGCTGCACGAAGGAAATGTCTCTGCTGCTAGAAATGTCACCACCTGGCAAGGCACTTGCTATCTTGCACCTCTCATTGGAGCTGTTTTGGCAGATGCTTATTGGGGACGATACTGGACAATTGCCATTTTCTCCACCATTTATTTCATTGGAATGGGTACATTGACTCTTTCTGCATCAGTTCCTGCCTTGAAGCCTGCAGAGTGTTTGGGTCCTGCATGTCCTCCAGCTACTCCTGCACAATATGCTGTGTTCTTCTTTGGTCTCTACCTGATTGCTCTTGGGACTGGTGGTATAAAACCATGTGTGTCATCTTTTGGGGCAGATCAGTTTGATGATACTGATCCCGGGGAAAGGATTAAGAAGGGATCCTTTTTCAACTGGTTTTACTTTTCTATCAACATAGGAGCCCTTGTTTCCAGCACTTTTATTGTTTGGATTCAAGAAAATGCTGGCTGGGGTCTTGGATTTGGCATTCCTGCTTTATTTATGGCATTAGCTATCGGAAGCTTCTTTTTAGGCACACCCCTTTACAGGTTTCAAAAACCAGGGGGAAGCCCTATTACAAGAATGTGCCAGGTTGTGGTAGCATCTGTCCGGAAGCGAAATCTGGTTGTCCCTGAGGATAGTAGTCTCCTATATGAGACGCCAGATAAGAGCTCTGCAATTGAAGGAAGTCGGAAACTAGAGCATAGTGATGAACTAAAGTGTCTTGATAGAGCAGCTGTAGCATCCGCTGCTGAGAGCAAAAGTGGTGATTATTCTAACAAGTGGAGACTTTGCACGGTGACACAAGTAGAGGAGTTGAAAATCTTGATTCGCATGTTTCCAGTTTGGGCTACTGTGATCGTTTTTGCTGCTGTTTATGCACAGATGTCAACACTGTTTGTGGAACAAGGAACGATGATGAACACAAATGTTGGTTCCTTCAAGATTCCTCCTGCTTCCCTCTCAAGTTTTGATGTGATAAGTGTTATTGTCTGGGTCCCTGTCTATGACAGGATTATTGTTCCCATTGCAAGGAAATTTACAGGCAATGAAAGGGGCTTTTCAGAGTTGCAAAGAATGGGAATTGGCCTTTTTATTTCAGTCCTGTGCATGTCAGCAGCTGCTATAGTGGAGATTGTGCGTCTGCAGCTTGCGAAAGAGCATGGCCTTGTTGATGAACCTGTTCCTGTACCACTTAATATATTTTGGCAAATTCCTCAGTATTTCTTATTGGGGGCAGCAGAAGTATTCACATTCATCGGGCAGCTGGAGTTCTTCTATGACCAATCTCCAGATGCCATGCGGAGTTTATGTAGTGCTTTGGCACTTTTGACTACTTCACTTGGGAATTACTTGAGCTCTTTCATTCTCACTGTAATGACTTACTTCACTACACAAGGTGGAAATCCTGGATGGATTCCAGATAACTTGAACAAGGGTCATCTTGATTACTTCTTCTGGCTTTTAGCTGGACTTAGCTTCTTAAATATGTTTGTGTACATAGTTGCTGCCAAAAGATACAAGGAAAAGAAGTCTGCTTAA

Predicted protein sequences of Glyma05g26670

Limit To All Plant Sequences

>Glyma05g26670.1   sequence type=predicted peptide   gene model=Glyma05g26670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSPENQLSLAEEALLQDDESKQYTGDGSVDFKGRPVLKRNTGNWKACPFILGNECCERLAYYGIATNLVTYLTQKLHEGNVSAARNVTTWQGTCYLAPLIGAVLADAYWGRYWTIAIFSTIYFIGMGTLTLSASVPALKPAECLGPACPPATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDPGERIKKGSFFNWFYFSINIGALVSSTFIVWIQENAGWGLGFGIPALFMALAIGSFFLGTPLYRFQKPGGSPITRMCQVVVASVRKRNLVVPEDSSLLYETPDKSSAIEGSRKLEHSDELKCLDRAAVASAAESKSGDYSNKWRLCTVTQVEELKILIRMFPVWATVIVFAAVYAQMSTLFVEQGTMMNTNVGSFKIPPASLSSFDVISVIVWVPVYDRIIVPIARKFTGNERGFSELQRMGIGLFISVLCMSAAAIVEIVRLQLAKEHGLVDEPVPVPLNIFWQIPQYFLLGAAEVFTFIGQLEFFYDQSPDAMRSLCSALALLTTSLGNYLSSFILTVMTYFTTQGGNPGWIPDNLNKGHLDYFFWLLAGLSFLNMFVYIVAAKRYKEKKSA*

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