Glyma05g26660 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g26660

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32578556
stop:	32581270
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02010	AT	Annotation by Michelle Graham. TAIR10: glutamate decarboxylase 4 \| chr2:474375-476495 REVERSE LENGTH=493	SoyBase	E_val: 0	ISS
GO:0006536	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutamate metabolic process	SoyBase	N/A	ISS
GO:0006540	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutamate decarboxylation to succinate	SoyBase	N/A	ISS
GO:0019752	GO-bp	Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamate decarboxylase activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0016831	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG1383	KOG	Glutamate decarboxylase/sphingosine phosphate lyase	JGI		ISS
PTHR11999	Panther	GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE	JGI		ISS
PTHR11999:SF1	Panther	SEX HORMONE-BINDING GLOBULIN	JGI		ISS
PF00282	PFAM	Pyridoxal-dependent decarboxylase conserved domain	JGI		ISS
UniRef100_B9SR96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9SR96_RICCO	SoyBase	E_val: 0	ISS
UniRef100_C6TF12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TF12_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26660

Paralog	Evidence	Comments
Glyma08g09670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g136100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26660

Limit To All Plant Sequences

>Glyma05g26660.1   sequence type=CDS   gene model=Glyma05g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTTCCAAAACCCTCTTCTGAGTCTGACCTCTTTCTTTATTCCAACTTTGCTTCTCGCTATGCCAGGGACTCTCTTCCCAGGTTCAGCATGCCAGAAAACTCCATGCCAAAGGAGGCTGCGTACCAGAACATACACGATGAGTTGCAGCTTGATGCAATTCCAAAGCTGAACTTGGCTTCCTTTGTGACCACTTCCATGGAAGAAGAGTGCAACAAGCTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGACGAGTATCCTGCCACCACCGACCTTCACAATCGGTGTGTGAACATGATTGCACGTATGTTCCATGCTGAAATTGGAGAAAATGAGAATGCAATTGGAGCAGGAACCGTGGGATCATCAGAGGCCATAATGTTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCAGAGGGCAAGCCTTATGATAAGCCCAATTTGGTGACCGGTTCCAATGTGCAAGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTAAGGGAAGTTGAGGTGAGAGAAGGCTACTATGTGATGGACCCTGTCAAAGCTGTTGAACTGGTTGATGAAAACACTATTTGTGTTGCTGCAATCTTAGGGTCAACTTACAATGGAGAGTTCGAAGATGTCAAGCTCTTGAATGACCAGCTGCTTGAAAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTACCCAGAGCTAGAATGGGATTTTAGACTCCCATTGGTGAAGAGCATAAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGCATTGGTTGGGTTATATGGAGAACCAAGGATGACTTGCCAGAAGACCTTGTCTTCCATATTAACTACCTTGGAGCTGACCAACCCACCTTCACCCTCAACTTCTCTAAAGGTTCTAGTCAGATCATTGCTCAATACTATCAGCTAATTCGCCTTGGCCATGAGGGATACAGGAGCATAATGGAGAACTGCAGAGACAATGCAATGGTGCTGAAGGAAAGTTTGGAGAAGAGTGGGCACTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTCAAAGACAGAAGCCGGTACGATGAGTTCAAGATATCGGAGATGTTGCGCCGCCATGGTTGGATCGTGCCGGCATATCCAATGCCACCTGCTGCTCAACACATCAATGTGCTCCGTGTGGTCGTCAGGGCTGAGTTTTCACGCACCCTTGCTGAACGCCTTGTGTTTGACATATACAATGTGCTGCATGAACTTGAAAAACTACACCCCCCAAAAGTGACCAAAAACACAAAGGAAGAGAACAAGGCCATGGTTGAAAATGGGGTGAAGAACACTGCATTGGATGCACACAGGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATTATGGCTGCCTAG

Predicted protein sequences of Glyma05g26660

Limit To All Plant Sequences

>Glyma05g26660.1   sequence type=predicted peptide   gene model=Glyma05g26660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFPKPSSESDLFLYSNFASRYARDSLPRFSMPENSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARMFHAEIGENENAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPVKAVELVDENTICVAAILGSTYNGEFEDVKLLNDQLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGHEGYRSIMENCRDNAMVLKESLEKSGHFNILSKDNGVPVVAFSLKDRSRYDEFKISEMLRRHGWIVPAYPMPPAAQHINVLRVVVRAEFSRTLAERLVFDIYNVLHELEKLHPPKVTKNTKEENKAMVENGVKNTALDAHREIIAQESNKRQKIMAA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain