Glyma05g26630 - SoyBase

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Report for Sequence Feature Glyma05g26630

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32558026
stop:	32564384
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02180	AT	Annotation by Michelle Graham. TAIR10: tobamovirus multiplication protein 3 \| chr2:560976-562961 FORWARD LENGTH=303	SoyBase	E_val: 0	ISS
GO:0046786	GO-bp	Annotation by Michelle Graham. GO Biological Process: viral replication complex formation and maintenance	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF06454	PFAM	Protein of unknown function (DUF1084)	JGI		ISS
UniRef100_I1K3A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3A2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZUM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZUM2_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26630

Paralog	Evidence	Comments
Glyma08g09640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g135900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26630

Limit To All Plant Sequences

>Glyma05g26630.4   sequence type=transcript   gene model=Glyma05g26630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTACGTGTATCAAGCACGACGTTTGGATTTCCGTTACTCCTCTCTCCCTTTTCTGTCTGAATCCAAATTATATCGCAATCGCCGGCCACAAAAACAAAACCCCACCACAGCAACAATAAAATAAATAAATAATTATAGCTTGTAAAAATTGTTGCAGAAAAGGCGAAAGAAAAGCATTTGAATATTTGTCAGAAAACGATAAAAAAAAAATAGTAGTAGTAATAATTATTAGATAGATTAAATTGCATTTCTGTTACTCTTTCTTTATTCGTCAATAGAAGAAGAAGATCGAACGAAGGCTCCTTCCGTTATTCCATTCAGCGATTCCATGGTGGCGAGAGGCGTGCCGGCAATGGCGGCGGTGGCCGTTGCCGCCCTTGACTTGACGGAATCCTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAGATTACTTTATGGTTGATATTATGGTGGAAACCTATCAGCGTGCTAGTCATCCTGTCTAAGATGTTCTTTGCAGGGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAGACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAGAAGCTACAAGAGGTTGGCTATGTGACTACCATATGCTTTTCATGCTTCCTTATCAGATGTGTTATGATGTGCTTTAATGCATTTGATAAAGCCGCCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACACAATATCACCCGATACGCTGAAAAGACTAGCATATGGAGAAAATTTAGTCAGGATTTCGTTGGTGGTTCTCTGCTTTCTTTGATGTTTCTCACACCACCCTAAAAGGATAATTTCTAGAGGACAGAGAAGTCAGTCTTTCTTCTGTTGGCAAAGCTAATATCATTGTTTTAAAGTTCTCCTAAGGTTTGTGTAGGTTTTGAAACGTGACATTTTATGGATTGTCAAACACGTTGGCTTGTGTTATATAAGTGATATTGCATTGTCTCTAGGAAAATGTGGTTGCTGTTCAGGTTCTGCAATTCAACACGATGAGCAAACCTTTTTTGGGAGAAAAGGACACTGATATATTGTAAAATAGTTTCTTAAGTCTTGTAACTGCTACTAGTTGGTGAAATGAAATGTACTGTTCCTTTTCAGTCACGTTCCTGTTAATTCATTCAATTCTTTTTTAAATATAATTTCTTTCATGTCTTCTGTGAATTTGACGAGGGCTATAAATTTG

Coding sequences of Glyma05g26630

Limit To All Plant Sequences

>Glyma05g26630.3   sequence type=CDS   gene model=Glyma05g26630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGAGAGGCGTGCCGGCAATGGCGGCGGTGGCCGTTGCCGCCCTTGACTTGACGGAATCCTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAGATTACTTTATGGTTGATATTATGGTGGAAACCTATCAGCGTGCTAGTCATCCTGTCTAAGATGTTCTTTGCAGGGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAGACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAGAAGCTACAAGAGGTTGGCTATGTGACTACCATATGCTTTTCATGCTTCCTTATCAGATGTGTTATGATGTGCTTTAATGCATTTGATAAAGCCGCCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACACAATATCACCCGATACGCTGA

>Glyma05g26630.4   sequence type=CDS   gene model=Glyma05g26630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGAGAGGCGTGCCGGCAATGGCGGCGGTGGCCGTTGCCGCCCTTGACTTGACGGAATCCTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATTTTCCACCTCCTCGCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTCGTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAGATTACTTTATGGTTGATATTATGGTGGAAACCTATCAGCGTGCTAGTCATCCTGTCTAAGATGTTCTTTGCAGGGGTTTCTTTGTTTGCAGCCCTTGGCTTTCTTCTCTACGGTGGAAGACTATTCTTGATGCTGCAACGCTTTCCTGTGGAATCCAAAGGTCGACGCAAGAAGCTACAAGAGGTTGGCTATGTGACTACCATATGCTTTTCATGCTTCCTTATCAGATGTGTTATGATGTGCTTTAATGCATTTGATAAAGCCGCCGACCTTGATGTCTTGGACCATCCCATTCTGAATTTTATATATTACCTGTTTGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACACAATATCACCCGATACGCTGA

Predicted protein sequences of Glyma05g26630

Limit To All Plant Sequences

>Glyma05g26630.3   sequence type=predicted peptide   gene model=Glyma05g26630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVARGVPAMAAVAVAALDLTESSNWWRDINRSPLWQDRIFHLLAILYGIVAAVALVQLVRIQLRVPEYGWTTQKVFHFLNFIVNGVRCFVFVFRRDVQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFYTINAVVYVIQITLWLILWWKPISVLVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFNAFDKAADLDVLDHPILNFIYYLFVEILPSTLVLFILRKLPPKRGITQYHPIR*

>Glyma05g26630.4   sequence type=predicted peptide   gene model=Glyma05g26630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVARGVPAMAAVAVAALDLTESSNWWRDINRSPLWQDRIFHLLAILYGIVAAVALVQLVRIQLRVPEYGWTTQKVFHFLNFIVNGVRCFVFVFRRDVQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFYTINAVVYVIQITLWLILWWKPISVLVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFNAFDKAADLDVLDHPILNFIYYLFVEILPSTLVLFILRKLPPKRGITQYHPIR*

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