Glyma05g26620 - SoyBase

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Report for Sequence Feature Glyma05g26620

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32544734
stop:	32549138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02160	AT	Annotation by Michelle Graham. TAIR10: CCCH-type zinc finger family protein \| chr2:553407-555899 REVERSE LENGTH=669	SoyBase	E_val: 2.00E-108	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4791	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR11224	Panther	MAKORIN	JGI		ISS
PTHR11224:SF27	Panther		JGI		ISS
UniRef100_I1K3A1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3A1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZUM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein 17 n=1 Tax=Arabidopsis thaliana RepID=C3H17_ARATH	SoyBase	E_val: 1.00E-105	ISS

Expression Patterns of Glyma05g26620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26620

Paralog	Evidence	Comments
Glyma08g09630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g135800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26620

Limit To All Plant Sequences

>Glyma05g26620.1   sequence type=CDS   gene model=Glyma05g26620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTACCCAACAACAGCCACAGCCACAGCTTCAGGTTCAGCCTCAGCAGTCGACACCACCCTCTTCACAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCACAGCGAGTATGCACGTGTTAATCCTAGGGACTGTCGGTATTGGTTGAGTGGCAATTGCTTGAATCCCAAATGTCCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAGTGACTGGTGGACCATCTGTATCCCCATCACAGATTCCAACAGCATCTGCAACACATGCACCGTATAATTCCAGTAAACAAGCTGTACCTTGCTTTTTCTTCCAAAAAGGACTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCACCCACTCCTACTTCTAGCACGGGTAATAAAGTAGCTGCTCAGGTTCCAGTGACTAGCCAAGGAGTTGAGAATCCATGTTTTAAGAAGCCTTTTGTCAGCAATGAAAAGTATACTCAGGAAAGGAAAACTTCCCAAGGAAATGTTGCAAAGTCAAGTGGAATTTCTGAAGCCAAACCTGCCTCAAAAATTGAAACTGCTCCTCAAAGAAATATGTTTGAATGGGAGAAGAAAGTGCCACCACCAGCTGTGGGATTTGATAATGAGGTTTCTAGATTTAAGACAACCTCTCCACCAGTGACCAATGGCCCTACTGTAGCCCGGCCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCAGAGTGGCAAGGACAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCACGGAGAAGATGAATTCAGTAAAGCAAGAGGTCAAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGACATTCTGGTGATTATAGTTTAGCAGCTGATATCGATCGTGAAAGATTCCGTGTGCCTCAAGGTTATGAGTCATATGATCACTTGCAGGAGCCGTATGCTTGGGAGCAGCATAGAAAGCCCTCAGCCCATGTAGACAGAAGGACTCGCCGCAGATCCAACAGTCCTGAAAATGCTGAGGTCTCAGATCTACGACATCATTTATCCAAGCGCAGGAAGGGCAATGGTTTGAAGTCTGTTGTCGGTCATGATTATGCCCATGAGGGCCATGGTGAGGAACAAAGTCGTCGGCCCTTCTCTCGGAAGGATTCACTTGAGTTACCTCTGAATGAGAGCTTCCTCGGTAACCGCTTCCGAGGTAGAATAAAACTTCCAGCAAATGGTGGTGCTGATCACCTAGAGAGGGAAGACAGGGGAAGATTTAGGAACAGATTGTCATCTGGAAGGTTGCCGGCCACTCACCATTTGTCACCTGGAGAGGGAAGGGTCCATGACAGAATAAGAGGAAGATTGCAAGATGATGAGAGGAGAAACTCCAAGGATCGATTGATGGGGAGAGAACTACCGGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTTTCTGAACTTAAAAATGGGAGGAACACTGAGAATAGGGAGCAACAATCACTGGGAAGGAGAAGAAGTTTAAGGGATGATCGCCCACAATCTGAAGATGATTTTCTGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAGAGGTGCTGGAGCTGATGCAGACTCTGGGAATGGCAAATCATCTGACAATAAGAATCAAGAAGTTACCAATGGCCAGAATCCTACACCTGCTGCAAACACACAAAATGGAGTGCTGTCTGAGACCAAAGAAGATGTCAAGAATCTTCCACCAAATAATGAAGAATCATCCAAGCTTGAGGTCACTGATGCAGCTGGAGGAGACAATGATGGTGAATATGAGGAGGGAATGGTGTACGATGAAGCAGGTGAGGATCAGTATTATGAAGGTGATGATCAGAGAGATGCGGACTATGAGTATGAACAAGGTGAAGGTGATGAGGGATACTATGAGTACGAGCAAGGTGAAGAGGGTGAAAATCAAGAGGAAGATTACATGGAAGAAGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCGTTCATTCGTAA

Predicted protein sequences of Glyma05g26620

Limit To All Plant Sequences

>Glyma05g26620.1   sequence type=predicted peptide   gene model=Glyma05g26620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTQQQPQPQLQVQPQQSTPPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCPFRHPPLDGLLGTQAAVTGGPSVSPSQIPTASATHAPYNSSKQAVPCFFFQKGLCLKGDRCAFLHGPPTPTSSTGNKVAAQVPVTSQGVENPCFKKPFVSNEKYTQERKTSQGNVAKSSGISEAKPASKIETAPQRNMFEWEKKVPPPAVGFDNEVSRFKTTSPPVTNGPTVARPNRLHQARVPDDHNFQSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFSKARGQDERNLDSLNEYDLGHSGDYSLAADIDRERFRVPQGYESYDHLQEPYAWEQHRKPSAHVDRRTRRRSNSPENAEVSDLRHHLSKRRKGNGLKSVVGHDYAHEGHGEEQSRRPFSRKDSLELPLNESFLGNRFRGRIKLPANGGADHLEREDRGRFRNRLSSGRLPATHHLSPGEGRVHDRIRGRLQDDERRNSKDRLMGRELPGDRSDFAGPKSLSELKNGRNTENREQQSLGRRRSLRDDRPQSEDDFLFEGPKPLSEILKEKRGAGADADSGNGKSSDNKNQEVTNGQNPTPAANTQNGVLSETKEDVKNLPPNNEESSKLEVTDAAGGDNDGEYEEGMVYDEAGEDQYYEGDDQRDADYEYEQGEGDEGYYEYEQGEEGENQEEDYMEEEDGDDFAKKIGVVHS*

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