Glyma05g26600 - SoyBase

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Report for Sequence Feature Glyma05g26600

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32522607
stop:	32524573
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02150	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:550340-552625 REVERSE LENGTH=761	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF34	Panther	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9RY36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RY36_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KRM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KRM7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26600

Paralog	Evidence	Comments
Glyma08g09601	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g135600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26600

Limit To All Plant Sequences

>Glyma05g26600.3   sequence type=CDS   gene model=Glyma05g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCTTTTTGCGCGCAACATCGGTAGCAGGGCCTCACTCCGAGTAAGCTCCTTCCATTCCTCACCCCTTCAAAATCCTTTTCCCCTTTTCTTCACTCCTTCATCCCTCTCCTCTCAAAATTCAATTTTTGCTCGCCCCATGATTTGGTTCGCCAGTTTTCTGTGTGTTATGAGATACCCCTTTGTCTCAAAACCTTCTTTTGATGACATTGCTTCCGAATCAATGCGTAGTTTCTTGCAGCAGGACCGTCCCCACTTGTTTGATTCAGCATTGGTACCCATTTGGGTGTCTAAGGATTTGCTTAATCTGAAAGGGGACCCTAAATCAGCCCTGAAGTTCTTCAAGGAGGCAGGGGCTCGAGCCGGGTTTCGCCACGCCGCGGAGTCTTATTGCGTTTTGGCTCACATTTTGTTTTGTGGAATGTTTTATCTTGATGCCAGGAGTGTCATTAAAGAGTGGATTTTGTTGGGGAGGGAGTTTCCAGGTTGTGATTTCTTTGATATGCTGTGGTCTACTAGGAATGTTTGTAGGCCTGGTTTTGGAGTGTTTGATACTTTGTTTAGTGTTTTAGTGGATTTGGGGATGCTTGAGGAGGCCAAGGCAATGCTTTTGGAAGAAGAACAAGTTCATGGTTCTGCCAAAATGAGGTCTTGTAATGATCTTCTTCACAGGCTTTCAAAATCAAGCAAAGGGGAATTGGCATTAAGCCTTTTCAAGGACATGGTTGTGGCTGGCCTTTCGCCCTCAGTTTTTACGTATAATATAGTGATAGGCTGTCTGGCCAGAGAAGGGGGCATAGAAACTGCCAGGAGTTTATTTGAAGAAATGAAAGCTCTGGGTCTTAGGCCAGACATTGTCACCTATAATCCTCTCATTTATGGGTATGGAAAGGTAGGGATGTTAACTGGAGCAGTCACTGTGTTTGAGGAAATGAAAGATGCAGGATGTGAACCAGATGTGATAACATACAATTCTCTTATTAATTTGAAAGAATTCCTCAAGCTTTTGAGCATGATACTGGAAGCAAATAAATTTTTTGTTGACATGATACATGTTGGTCTTCAACCCAATGAATTTACGTATACATCTCTAATTGATGCAAATTGTAAAATAGGTGATCTCAATGAAGCATTTAAACTGGAAAGTGAGATGCAGCAGGCTGGAGTTAACTTAAATATCGTCACCTACACTGCATTACTGGATGGTCTTTGTGAAGATGGAAGAATGAGAGAGGCAGAAGAATTATTTGGGGCATTGTTAAAAGCTGAATGGACTCTTAATCAGCAGATTTATACTTCCCTTTTTCATGGATATATCAAGGCTAAGATGATGGAGAAGGAAATAAACAAGAAAAACTTCAAGCCAGATCTGTTGCTGTATGGAACTAAAATATGGGATTTTTGCAGACAAAATAAAATAGAAGATTCTATGGCTGTAATTCGGGAGATGATGGATTTTGGTCTGATTGCAAATAGTTACATATATACAACCCTTATGGATGCATATTTTAAGGTTGGAAAAACCACAGAGGCTGTTAATCTATTACAAGAGATGCAAGATTTGGGTATCAAGATAACGGTGGTAACGTACGGTGCACTAATTGATGGTTTATGCAAAAAAGGTTTAGCTCAACAGGCTGTTAGTTACTTTGACCACATGACTAGAACTGGTTTGCAACCTAATATTATGATTTATACTGCTCTGATTGATGGCCTTTGTAAAAATGATTGTGTTGAAGAAGCCAAGAACCTGTTCAATGAGATGCTGGATAAGGGAATCAGTCCAGATAAATTAATTTATACTTCTTTGATTGATGGGAACATGAAGCATGGAAATCCTGGAGAAGCTGAGTTTGCGAAATAG

Predicted protein sequences of Glyma05g26600

Limit To All Plant Sequences

>Glyma05g26600.3   sequence type=predicted peptide   gene model=Glyma05g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLFARNIGSRASLRVSSFHSSPLQNPFPLFFTPSSLSSQNSIFARPMIWFASFLCVMRYPFVSKPSFDDIASESMRSFLQQDRPHLFDSALVPIWVSKDLLNLKGDPKSALKFFKEAGARAGFRHAAESYCVLAHILFCGMFYLDARSVIKEWILLGREFPGCDFFDMLWSTRNVCRPGFGVFDTLFSVLVDLGMLEEAKAMLLEEEQVHGSAKMRSCNDLLHRLSKSSKGELALSLFKDMVVAGLSPSVFTYNIVIGCLAREGGIETARSLFEEMKALGLRPDIVTYNPLIYGYGKVGMLTGAVTVFEEMKDAGCEPDVITYNSLINLKEFLKLLSMILEANKFFVDMIHVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAEWTLNQQIYTSLFHGYIKAKMMEKEINKKNFKPDLLLYGTKIWDFCRQNKIEDSMAVIREMMDFGLIANSYIYTTLMDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGALIDGLCKKGLAQQAVSYFDHMTRTGLQPNIMIYTALIDGLCKNDCVEEAKNLFNEMLDKGISPDKLIYTSLIDGNMKHGNPGEAEFAK*

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