Glyma05g26545 - SoyBase

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Report for Sequence Feature Glyma05g26545

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32474844
stop:	32487616
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26545

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G37140	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:14690436-14692851 FORWARD LENGTH=692	SoyBase	E_val: 6.00E-21	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR10887	Panther	DNA2/NAM7 HELICASE FAMILY	JGI		ISS
PTHR10887:SF27	Panther	SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1	JGI		ISS
PF00580	PFAM	UvrD/REP helicase	JGI		ISS
UniRef100_Q7XPT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0083N12.5 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XPT5_ORYSJ	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339B09	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339B09 related cluster n=1 Tax=unknown RepID=UPI0002339B09	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26545

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g26545 not represented in the dataset	Glyma05g26545 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26545

Paralog	Evidence	Comments
Glyma08g09531	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26545 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma05g26545

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26545

Limit To All Plant Sequences

>Glyma05g26545.1   sequence type=CDS   gene model=Glyma05g26545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGAAGTTCTGGTGATCATGGCTTTGTAGACATCATATTTTCGTGGTCTCTTGAAGACATTTTCAATGAAGATCTGTACAAGGACAAGTACAGGATGCATCCAGCAATAAGTTCATTTCCAAATTCACACTTCTATTTTAACCAAATTCTTGATGCTCCAAATGTTGTGAGAAAGAACTACAGAAAACAATATCTTCCAGGGCCAATGTTTGGGCCCTATTCCTTTATAAATGTAGTTGGTGGCATTGAAGAGTTTGATGATGCTGGACGAAGCCGGAAAAATATGGTTGAAGTAGCAATTGTGATGAAAATAATTAAAAATTGTTTTAAAGGTTTGAATATGGTGGTCCCAATAAGTTGGGAAAGATCAACAGAGATCACTAAATTTAAGACTCTTGATAATAATGGAAATGAAGCTGAATTAAGTGGTTGTGATCAAAGAATTTATGTGGAGAACTCAAAGGTTGAGGAGAGTTTGTTATTGATGAAATTCTACTCCTTATCATCAGTTGTAATTAGTCACTTGCTTTCTGATCGTATCAGTGATGAATTTGATCTTCCCTTTGAAGTATCAGATGAAGAATATGACATAATCCTCTTTCCTAAAAGTACATTTGTATTGGGTCGCTCTGGTACTGGAAAAACCACTGTTTTGACTGTGAAGTTATTTCAAAAGGAGTACAAGCATCACATGGCTGTTGAAGAAACGTATGGAATTAACAGTGCTGCAGTTCCTTGTTTGAATCATGATAAAGAGTATAAAAAGAGTTCTACTACGAATGATAGGCCTGTCTTGCACCAGCTATTTGTTACAGTCAGTCCTAAACTATGTCAGGCAGTAAAACATCATGTTGTGCGATTGAAAAGATTCGTATGTGGTGGCAATATTGCTGCTGAAAGCAATTCTATTGAGGAAGATATTGTTGATGTTGATACATCAATACAGTTTAAGAATACACCAGACTCTTTTATGAATCTTCCTATCGACTCATATCCCCTTGTGATAACATTTCAGAAGTTTCTAATGATGCTTGATGGGACTGTGGGGATTTCCTATTTTGAGAGATTCAGTGACTTATCTTCTGATGGTAAGAACCTCAGTGCAAGGTCTGTTGCTTTGGAAACATTCATCAGAAAGAAAGAGGTGACTTATGGCAGGTTTGATTCATTGTATTGGCCCCATTTTAATTATCAGTACACTAAGAAGCTTGATTCCTCTAGAGTGTTCACTGAAATCATATCCCATATAAAAGGGGGTATGCAAGCGGTGGAATCTAGTGATGGTAAGCTAAGCCGTGAGGAATATCTTTCATTATCTGAAAATCGAGCATCAAGTCTTATCAGGCAGAAAAGAGAGATCATATATGATATTTATCAAAGTTATGAGAAAATGAAGAATGATAAAGGGGATTTTGATTTGGCGGACATTGTGATTGATCTTCACCGTCGTCTCAGAATAAACAAATATGAGGGTGATGAGATGCACTTTGTGTACATTGATGAGGTGCAAGATTTAACCATGAATCAAATTGCTTTGTTCAAATATGTGTGCCAAAATGTAGAAGAAGGTTTTGTGTTTTGTGGGGACACTGCTCAAACAATAGCAAGGGGAATTGATTTTAGGTTCCAAGATATAAAATCTCTCTTTTACAAGAGATTTGTGCTAGAATCAAAGGGCAACACACACAATCAAGGAAAAGTGAAAGGGAAAATTTCAGAAACTTTTTTATTGAGTCAGAACTTTCGCACTCATGCTGGAGTGCTGAAACTATCCCAGAGCACCATTGAACTTCTTTTTCGTTTTTTCCCTCATTCTATTGATGTTTTGAAGCCTGAGACCAGTTTGATATATGGGGAAGGTCCAGTGGTTCTTGAATGTGGAAGTAGGAAAAATGCAATTGTAACTATTTTTGGCAACAGTGGACATGTGGCTGGAAAAATTGTTGGCTTTGGTGCTGAGCAAGTAATTTTGGTACGAGATGATTCTGCTCGTAAGGAAGTTTTAGACTATGTGGAGAAGCAGGCTCTTGTTTTAACCATTTTAGAGTGCAAAGGCCTTGAGTTTCAGGTTGTGAAAGAATCTTATCTAATTCATTTCTACTTTGTATATTATGTATATTTTTTAATGGATGTATTGCTGTACAACTTTTTTGGCTCTTCACCTTTGAAAAATCGATGGAGAGTGATATATGAGTATATGAAGGAACAAGAAATGTTGGAACCTACAGAACTTAAGTCGTATCCAAATTTCAGTGATTCCAAACACAATCTCTTGTGCTCTGAACTTAAGCAGTTATATGTGGCTATAACTCGTACAAGACAAAGATTGTGGATATGTGAGAATACAGAAGTGTACTCTAGACCTATGTTTGATTATTGGAGAAAGAAAGGTCTTGTGCAATTTAAAGAACTGGATGATTCACTTGCTCAAGCAATGAAAGTTGCAAGTAGTCCTGAAGAATGGAGGTCTCGTGGCAAAAAGCTATACTATCAAAATAACTATGAGATGGCAACGATGTGTTTTGAAAGAGCAGGAGACTCTTACTGGGAGAGAAAGTCTAAGGCTTCTGGTCTTAGGGCAAATGCAAACCGTTTGCGTGATTTGAATCCTGAGGATTCAAATGCAATGCTTAGGGAAGCTGCTGAAATTTTTGAAGGCATAGGAATGGCTGAATCTGCTGCCCAGTGTTTTTCTGATTTAGGGGATTATGAAAGAGCTGGGAAGCTCTATTTGGAGAAATGTGAAGAGCCTGATTTGAAAAGAGCAGGGGATTGCTTTTATTTAGCTGGATGTTATGAAACTGCAGCTCGAGTGTATGCTGGAGGCAGTTTCTTCTCAGATTGTTTGAATGTTTGTGCAAAAGGAGGGTTGTTTGATATTGGCTTATATTACATTCAACACTGGGAAAAAAATGAAAATGCTGATCATTGTATGGTAGACAGTCATGAACTATTCACAATAGAACAAAAATTTCTGGAAAATTGTGCTCGTAATTATTTGGATCGTAAAGATACCAGATCCATGATGAAATTTGTTAAAGCTTTTCACTCAATGGATTTGAAGCGTGAGTTCTTAAGATCATTAAGTTTACTTGATGAGCTTCTTGTGTTAGAAGAGGAGTCAGGGAACTTTATGGAAGCTGCAAACATTGCTAAGATGATGGGTGATGTTCTACATGAGGTTGATCTACTGGGAAAAGCTAGTAAATTCATGGAAGCTTGTGAACTTATGCTTTTGTATGTACTTGGGAATTCTCTTTGGTCTGCAGGAAGCAAAGGGTGGCCCATAAAGCCATTTGCACAAAAAGTTGAGCTCTTGAATAGAGCATTATCTTTTGCAAAGGAAGAGTTGAGCAGCTTTTATGTGATTGCATCTACCGAAGCTGAAATATTATCAAATGAGCATAGTAACACTTTTGAGATACTGAATCATTTGAAATCATCTCGCACATATGGGAGTATTAGAGGTGAAATAATATGTTTGTGGAAGCTTTTGGATGCTCATTTTCAGCTGAACTCCTCCAAGTTTGTCTGGCTAGACAATTTGTTAGATGATTCTGTGGAAGGAATGTTATTGGAGAATCAATTTTCTGTGGAGTCATTGTTTCATTGTTGGACGTGTTGGAAAGATAACATTGTCTGTGTAGTGGAATCTCTTCCAAGTCTCAAATCACAAGATATTCATCATCACAGCAGTTATGGAAAGTTTGCATTGAATTATTTGGGTGTTCGGAAGCAAACGTCTAATCTAAATGACATTTACATTTTGCTCATCCCTGAAGCTAACTGGGTGATGAAACTGGGTGATAGGTTTCTAAAGAAGAATGGAAGGCTAGTTTCTGTTGATGTTCAAGATTTAGTTTCTGCTGCTGAGAGCTATTGGTCTTCACAATTGGTTTCAGTTGGCATGAAAGTCCTGCACATCCTTGATGCACTCTACAAATTTTCTGCTAGTAAAGCTCTTTCTGAATTTTGTCAATTCAGGTCCTTATTTCTGATCTATGATGTTTTCAAATTTCTCCTCAAATCTAAATGTTTTAACCTCAACCATGGTAACTTAAAAACATTGGAGAAATTTAGCAGAACTCCAATTGACCGTTCATTGTGCTATTTAGTTCCTCTTGACTGGAGTAAATCACTGATAAAAGATATGGTTTATCTTAGAACAACAGAAACTTGTCAGGATTTGGTTAAAGATGTGATCTATGAAAACATTAATCGGAAAGATATGCTGACTTATGGTCAAATTGGAAATGTGGTAGTCATGATTCTTGGTACAGCTAATCTAAAAAGTGAACTGTTTGTGAAAATTTTGGCAAGATTTAAAGAGAATCCACTCTGGCAAGAGTTCATTCAGAGCTTGCATTTAAATTCAGCTCAGAAAAATTCACATGTTGATGAAGCAGTAGAGAATTTTTATAAAGCTTTGCAGTACACTTACAGTGTGAATTGGACAAGGGAAATTGACTATATATCTCCCAGTTGTTTTATGTACCTCCTTGACCGCCTTCTGCTCTTAACATCACACGGGAAGTGGAAGGGGTTCATTTTTGCTACAAAATCATCGTTTGTTGAATGGCTTATTCACCAGGATGAAAATTCCTTTCCAAATTTGAGTGTAATGGCTGATGTACAATCAGGTGGAGAGCATATCCATAGGTTCATTTTTTCTGTCCTCCGTGAGCTTCTTAATGATCAAAATGGTACCATAAGTTGGATTAGAAAATCAAATCTCAATGTGAAAAATTATTTTCCGTTGTTTCTTCTGAGATTGATTGTTTCGTTATGTTTGCTTCATTTGAGCTCTGGAAAGTATTTAGAGTTACTTCACAATTTGTTGAAGAAGAACCATGTGTTGTCTCAACTGCCACTGGAATTTCGTAATGTTCTTCAGAAAGGAAGGAATCATCTGGTTTTGAAAGTCTTTGCTGAGGCATTTAAACTGATTGGCAATCCCTTGGTAGTTGCCAGGTTTCATAACACATCTTCAGAAATTTTGTGTCCAGATGCTGTGTTTGTGGATTTAACAATATGCCAAAGAAAGTTCATATTAGAAGTATTGTTTCCAAATAGAGTTGACAGTGTGGATGAGGAAACTGCAGCAGTATTAGAAGCTTCTGACTCAACGTCTAAGGAGTTTTCTTCAACAAACTGTTCCAGTTTTCCAAATAAAAGCTCTCCTATTGTTACTGCTCAGACATCAGATAGGGAGATTATTGGCATGTCTACCAATGCTGACTCTTTCTGGGCTACGATGAATAATTTATGGTTTGCAATTGATCATAAGGTGCTACACAATTCCACAATCACAAAGAATAGCAATGTTGGGAATGAGTCATCACAAGCCAAAACTGCAGTAGCCAATGATGAGCATGGGCAAAATGCTTTAGAGGAATCAAAAGATAACTTGTCCAAGAATTCCGAAGGTGCCACCAACTCAGGACATGGAAACATCAAGGAAAATACCAAGGGGAAGAAAAACAAAAAAAAGAAAGGCAAGGGTGGGAGAAGGGGTAAGAAGTGA

Predicted protein sequences of Glyma05g26545

Limit To All Plant Sequences

>Glyma05g26545.1   sequence type=predicted peptide   gene model=Glyma05g26545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRSSGDHGFVDIIFSWSLEDIFNEDLYKDKYRMHPAISSFPNSHFYFNQILDAPNVVRKNYRKQYLPGPMFGPYSFINVVGGIEEFDDAGRSRKNMVEVAIVMKIIKNCFKGLNMVVPISWERSTEITKFKTLDNNGNEAELSGCDQRIYVENSKVEESLLLMKFYSLSSVVISHLLSDRISDEFDLPFEVSDEEYDIILFPKSTFVLGRSGTGKTTVLTVKLFQKEYKHHMAVEETYGINSAAVPCLNHDKEYKKSSTTNDRPVLHQLFVTVSPKLCQAVKHHVVRLKRFVCGGNIAAESNSIEEDIVDVDTSIQFKNTPDSFMNLPIDSYPLVITFQKFLMMLDGTVGISYFERFSDLSSDGKNLSARSVALETFIRKKEVTYGRFDSLYWPHFNYQYTKKLDSSRVFTEIISHIKGGMQAVESSDGKLSREEYLSLSENRASSLIRQKREIIYDIYQSYEKMKNDKGDFDLADIVIDLHRRLRINKYEGDEMHFVYIDEVQDLTMNQIALFKYVCQNVEEGFVFCGDTAQTIARGIDFRFQDIKSLFYKRFVLESKGNTHNQGKVKGKISETFLLSQNFRTHAGVLKLSQSTIELLFRFFPHSIDVLKPETSLIYGEGPVVLECGSRKNAIVTIFGNSGHVAGKIVGFGAEQVILVRDDSARKEVLDYVEKQALVLTILECKGLEFQVVKESYLIHFYFVYYVYFLMDVLLYNFFGSSPLKNRWRVIYEYMKEQEMLEPTELKSYPNFSDSKHNLLCSELKQLYVAITRTRQRLWICENTEVYSRPMFDYWRKKGLVQFKELDDSLAQAMKVASSPEEWRSRGKKLYYQNNYEMATMCFERAGDSYWERKSKASGLRANANRLRDLNPEDSNAMLREAAEIFEGIGMAESAAQCFSDLGDYERAGKLYLEKCEEPDLKRAGDCFYLAGCYETAARVYAGGSFFSDCLNVCAKGGLFDIGLYYIQHWEKNENADHCMVDSHELFTIEQKFLENCARNYLDRKDTRSMMKFVKAFHSMDLKREFLRSLSLLDELLVLEEESGNFMEAANIAKMMGDVLHEVDLLGKASKFMEACELMLLYVLGNSLWSAGSKGWPIKPFAQKVELLNRALSFAKEELSSFYVIASTEAEILSNEHSNTFEILNHLKSSRTYGSIRGEIICLWKLLDAHFQLNSSKFVWLDNLLDDSVEGMLLENQFSVESLFHCWTCWKDNIVCVVESLPSLKSQDIHHHSSYGKFALNYLGVRKQTSNLNDIYILLIPEANWVMKLGDRFLKKNGRLVSVDVQDLVSAAESYWSSQLVSVGMKVLHILDALYKFSASKALSEFCQFRSLFLIYDVFKFLLKSKCFNLNHGNLKTLEKFSRTPIDRSLCYLVPLDWSKSLIKDMVYLRTTETCQDLVKDVIYENINRKDMLTYGQIGNVVVMILGTANLKSELFVKILARFKENPLWQEFIQSLHLNSAQKNSHVDEAVENFYKALQYTYSVNWTREIDYISPSCFMYLLDRLLLLTSHGKWKGFIFATKSSFVEWLIHQDENSFPNLSVMADVQSGGEHIHRFIFSVLRELLNDQNGTISWIRKSNLNVKNYFPLFLLRLIVSLCLLHLSSGKYLELLHNLLKKNHVLSQLPLEFRNVLQKGRNHLVLKVFAEAFKLIGNPLVVARFHNTSSEILCPDAVFVDLTICQRKFILEVLFPNRVDSVDEETAAVLEASDSTSKEFSSTNCSSFPNKSSPIVTAQTSDREIIGMSTNADSFWATMNNLWFAIDHKVLHNSTITKNSNVGNESSQAKTAVANDEHGQNALEESKDNLSKNSEGATNSGHGNIKENTKGKKNKKKKGKGGRRGKK*

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