Glyma05g26500 - SoyBase

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Report for Sequence Feature Glyma05g26500

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32448836
stop:	32452781
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1K388	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K388_SOYBN	SoyBase	E_val: 4.00E-72	ISS
UniRef100_Q7XPK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0070C17.3 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XPK9_ORYSJ	SoyBase	E_val: 2.00E-07	ISS

Expression Patterns of Glyma05g26500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26500

Paralog	Evidence	Comments
Glyma08g09470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g134500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26500

Limit To All Plant Sequences

>Glyma05g26500.2   sequence type=transcript   gene model=Glyma05g26500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATGCAATTTCCCTTCTCATATAACCTACCAAAGCTGCACAGCAAAACACCGCCTCTTTCGTAAAGCAGAGTCCGCATACGCAGTTTGCATTCGTTTGAACTCTGTTCTGTTGCCTCCACAAACCAAACCAGGCCCAAGTAGTACAGTGAAAACGAAATTGAAGTATAGCTAGGTGAAAGGAAGTAGTCAAGTACAAGAGAATGGCGAAGTCATTGAGATCAAAGAGGGAGAAGAGGCTGAGGGCTATTCGGAGGGAGATTGTTGAACCTTTCTATGACAAGAAAGAAGCTGCTAAGCTCGCTGCCCAAGAGGCCGCCCTTGCCGCACCTAAGCTGGAGGTTCCTTCGAAACCAAATACTGCCATGGAAGCGTCCACTTCCACTAACAACACCAACATTGATGTGGAGATGGCTGATGGCAGTCAAAGCATGGCTTCCTTAAAGCCTGTTGGTGGAATAGGGAAGAAATCCAAAAATAAATTGAAATTGGCTAAAAAGAAACGACGTGGTAATGGAAAGATCAAGAGAAACCGTAAGATTTGACTCCAAGTAAAGAATGGGAGGAAAACGTATGCGCAGATAAGTTGGCTAACTTAGGATTCATGCACCTGGGTTTTACTTGGTGGAATTCTTTGCCCACTAGCCTTCATGAGCCTTTCTTTAGAGATAGAGTAGACCTTCTTAATTATTGCTTCTGTTAATGTTTCTTTGTCCCCCACCTTGTTTTCTTTTTTTCTCTCTTTTTCTTCAATAAACTTTTGTGATTAGCAGTATAAGATTCATGAACACATTTAAAGGCAAGCATACCCTATCAAGATAATAACAATGGATAGAAATCAGATATCAAACCCAAAAAGAACTAGTTATGTTACCAAGCAGTAGAGAAATTCAATAGTAAT

Coding sequences of Glyma05g26500

Limit To All Plant Sequences

>Glyma05g26500.1   sequence type=CDS   gene model=Glyma05g26500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGTCATTGAGATCAAAGAGGGAGAAGAGGCTGAGGGCTATTCGGAGGGAGATTGTTGAACCTTTCTATGACAAGAAAGAAGCTGCTAAGCTCGCTGCCCAAGAGGCCGCCCTTGCCGCACCTAAGCTGGAGGTTCCTTCGAAACCAAATACTGCCATGGAAGCGTCCACTTCCACTAACAACACCAACATTGATGTGGAGATGGCTGATGGCAGTCAAAGCATGGCTTCCTTAAAGCCTGTTGGTGGAATAGGGAAGAAATCCAAAAATAAATTGAAATTGGCTAAAAAGAAACGACGTGGTAATGGAAAGATCAAGAGAAACCGTAAGATTTGA

>Glyma05g26500.2   sequence type=CDS   gene model=Glyma05g26500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGTCATTGAGATCAAAGAGGGAGAAGAGGCTGAGGGCTATTCGGAGGGAGATTGTTGAACCTTTCTATGACAAGAAAGAAGCTGCTAAGCTCGCTGCCCAAGAGGCCGCCCTTGCCGCACCTAAGCTGGAGGTTCCTTCGAAACCAAATACTGCCATGGAAGCGTCCACTTCCACTAACAACACCAACATTGATGTGGAGATGGCTGATGGCAGTCAAAGCATGGCTTCCTTAAAGCCTGTTGGTGGAATAGGGAAGAAATCCAAAAATAAATTGAAATTGGCTAAAAAGAAACGACGTGGTAATGGAAAGATCAAGAGAAACCGTAAGATTTGA

Predicted protein sequences of Glyma05g26500

Limit To All Plant Sequences

>Glyma05g26500.1   sequence type=predicted peptide   gene model=Glyma05g26500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKSLRSKREKRLRAIRREIVEPFYDKKEAAKLAAQEAALAAPKLEVPSKPNTAMEASTSTNNTNIDVEMADGSQSMASLKPVGGIGKKSKNKLKLAKKKRRGNGKIKRNRKI*

>Glyma05g26500.2   sequence type=predicted peptide   gene model=Glyma05g26500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKSLRSKREKRLRAIRREIVEPFYDKKEAAKLAAQEAALAAPKLEVPSKPNTAMEASTSTNNTNIDVEMADGSQSMASLKPVGGIGKKSKNKLKLAKKKRRGNGKIKRNRKI*

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