Glyma05g26460 - SoyBase

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Report for Sequence Feature Glyma05g26460

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32419881
stop:	32421173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30950	AT	Annotation by Michelle Graham. TAIR10: F-box family protein \| chr1:11036180-11037508 FORWARD LENGTH=442	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0031146	GO-bp	Annotation by Michelle Graham. GO Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription factor binding	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_I1K384	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K384_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q84UE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proliferating floral organs protein n=1 Tax=Lotus japonicus RepID=Q84UE8_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26460

Paralog	Evidence	Comments
Glyma08g09380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g134000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26460

Limit To All Plant Sequences

>Glyma05g26460.1   sequence type=CDS   gene model=Glyma05g26460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTTTTCACCCTTCTATGTCCTCTCCTTTTTCGTACACATTCCCTATCAGTGGTGCTGGTACTAGCAATTACAGCACTTCCACTCCATGGATGAACAGCAGAATATGGAGCAAGCTCCCTCAGAGGCTTCTTGACCGTGTCATAGCCTTTCTTCCTCCACCAGCATTCTTTCGTGCACGTTGTGTTTGCAAGAGATGGTATGCACTTCTCTTCTCCAACACCTTCCTCGAATTGTACCTTCAAGTCTCACCACACCAGCACTGGTTCTTGTTCTTCAAGCACCACAAGACCCGCAAGAGCTACATCTACAAGAACAACAACAATGGAACAAGTGGTGGTTGTGGACATCACGGTGGTGCGTTTGAAGGGTACCTCTTTGACCCCTATGAGATGGCATGGTACCGCATTTCCTTTGCTTTGGTCCCTTCTGGCTTCTCTCCAGCTTCATCTTCTGCCGGTTTACTTTGCTGGGTTTCTGATGAGGCTGGTCCAAAGACCATGCTTCTGAGCAACCCTTTGATCGGTTCTCTCACTCAGCTACCTCCAACATTAAGACCTAGACTCTTCCCTTCCATTGGCTTAACCATTAGCCCCACCTGCATAGATGTCACTGTTGCTGGTGATGACATGATATCCCCTTATGCAGTGAAGAACTTGACATCTGAAAGCTTTCACATCGATGGAGGAGGTTTTTTCTCCTTGTGGGGCACCACCTCTTCTCTTCCAAGGCTCTGCAGCCTCGAATCTGGAAGAATGGTTTATGCTGAAGGAAAATTCTACTGCATGAATTGTAGCCCTTTCAGTGTTTTGGCTTATGACATCACCTCAAACACTTGGTTCAAAATACAAGCCCCAATGAGGAGGTTTCTAAGGTCTCCAAACCTAGTTGAGTGCAAGGGGAAGCTTCTTCTTGTTGCTGCTGTGGAGAAGAGCAAGCTCAACGTGCCAAAGAGTTTGAGGGTGTGGAGTTTGCAGGCGTGTGGGACAATGTGGGTGGAGTCAGAGAGAATGCCGCAGCAGCTTTATGTTCAGTTTGCTGAATTGGAAGATGGGAACGGGTTTGAATGTGTAGGGCATGGTGAGTTTATTGTCATCATGATCCGTGGAACGGACAAGGCCTTGCTGTTTGATATATGCAGGAAGAGGTGGCAGTGGATTCCACCTTGTCCTTACATTGCACATGATGGATTTGAGTTGCATGGTTTTGCATATGAGCCTAGGCTTGCCACCCCTGTCACTGGCCTCCTTGATCAATTGGCACTGCCCTTCCAGAGTTTCAATGCTTAG

Predicted protein sequences of Glyma05g26460

Limit To All Plant Sequences

>Glyma05g26460.1   sequence type=predicted peptide   gene model=Glyma05g26460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGFHPSMSSPFSYTFPISGAGTSNYSTSTPWMNSRIWSKLPQRLLDRVIAFLPPPAFFRARCVCKRWYALLFSNTFLELYLQVSPHQHWFLFFKHHKTRKSYIYKNNNNGTSGGCGHHGGAFEGYLFDPYEMAWYRISFALVPSGFSPASSSAGLLCWVSDEAGPKTMLLSNPLIGSLTQLPPTLRPRLFPSIGLTISPTCIDVTVAGDDMISPYAVKNLTSESFHIDGGGFFSLWGTTSSLPRLCSLESGRMVYAEGKFYCMNCSPFSVLAYDITSNTWFKIQAPMRRFLRSPNLVECKGKLLLVAAVEKSKLNVPKSLRVWSLQACGTMWVESERMPQQLYVQFAELEDGNGFECVGHGEFIVIMIRGTDKALLFDICRKRWQWIPPCPYIAHDGFELHGFAYEPRLATPVTGLLDQLALPFQSFNA*

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