Glyma05g26340 - SoyBase

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Report for Sequence Feature Glyma05g26340

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32325252
stop:	32326233
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_C6TEK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TEK1_SOYBN	SoyBase	E_val: 3.00E-155	ISS

Proteins Associated with Glyma05g26340

Locus	Gene Symbol	Protein Name
	VQ16	VQ motif containing protein gene 16

Expression Patterns of Glyma05g26340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26340

Paralog	Evidence	Comments
Glyma08g09250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g133000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g26340

Limit To All Plant Sequences

>Glyma05g26340.1   sequence type=CDS   gene model=Glyma05g26340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGATAACATGACCGCCATGGCTGATCAATGCATTCATGATCCATCCATAGAAAGACTCATGGATGCAACCATGTCATCATCATCAGAGGGCATGATGATGTTGAGACCAACCAATTCACACAACTACACAACAAGTGGCCACAATTTAACTCCAAAGGGTTGTGCATTCAAACCAATCCGAAGGAGATCTAGAACTTCTAAGAGCACTCCAATTACCCTTCTCAAAGCCAACACCTCCAATTTCAGGGCATTGGTACAACAATTCACTGGGTGTCCTACCACAACCACCATGTCACTTGCAATCCATAAGGGTCCCATTACCTTAAATTTCCAACAAGATGGTACCAAACAACATATTCATCACGATCAGCATCACACAAAAATAACAACTAGAGGAGCAATGCCACCATTTGCCACCATAAGTTCTAACCAAAACCATGCTTCTGTGCCATTTCCTAAGCAACAATTGATGCAAGAGCAGCAAAGTGGATACTTTCTTCCAACTTATTCGGGTAACTCATATAGGCCAATTAGCTGCATGGATGATGGATTGATCTTTGATAATGATTTTAGTTTGCATGAACTAACTGTGAATGCCATCTCCAATGATAGCGATGGTTTATTTATGTGA

Predicted protein sequences of Glyma05g26340

Limit To All Plant Sequences

>Glyma05g26340.1   sequence type=predicted peptide   gene model=Glyma05g26340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDNMTAMADQCIHDPSIERLMDATMSSSSEGMMMLRPTNSHNYTTSGHNLTPKGCAFKPIRRRSRTSKSTPITLLKANTSNFRALVQQFTGCPTTTTMSLAIHKGPITLNFQQDGTKQHIHHDQHHTKITTRGAMPPFATISSNQNHASVPFPKQQLMQEQQSGYFLPTYSGNSYRPISCMDDGLIFDNDFSLHELTVNAISNDSDGLFM*

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