Glyma05g26240 - SoyBase

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Report for Sequence Feature Glyma05g26240

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32239175
stop:	32248287
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31070	AT	Annotation by Michelle Graham. TAIR10: N-acetylglucosamine-1-phosphate uridylyltransferase 1 \| chr1:11084951-11088361 FORWARD LENGTH=505	SoyBase	E_val: 0	ISS
GO:0006047	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-N-acetylglucosamine metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0019276	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-N-acetylgalactosamine metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003977	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylglucosamine diphosphorylase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
GO:0052630	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylgalactosamine diphosphorylase activity	SoyBase	N/A	ISS
KOG2388	KOG	UDP-N-acetylglucosamine pyrophosphorylase	JGI		ISS
PTHR11952	Panther	UDP- GLUCOSE PYROPHOSPHORYLASE	JGI		ISS
PTHR11952:SF2	Panther	UDP-N-ACTEYLGLUCOSAMINE PYROPHOSPHORYLASE 1	JGI		ISS
PF01704	PFAM	UTP--glucose-1-phosphate uridylyltransferase	JGI		ISS
UniRef100_D7LHR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UTP--glucose-1-phosphate uridylyltransferase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LHR5_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1K361	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K361_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26240

Paralog	Evidence	Comments
Glyma08g09170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g132100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26240

Limit To All Plant Sequences

>Glyma05g26240.2   sequence type=transcript   gene model=Glyma05g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATGTGAAAGAGGGAGGGGTATTTAGGTCATTGTGAGAGTGACCGAAGGAGGGTGGTTACCGATTTGATTCTTGTCTTCCTCGCCACTGTTCCCCTGTCTCCATAACCAACCAACCATACATTAACACCAACACTCAACCTCACTCAGTCGCTCGCTCGCTCTCTTCACAATTTCGAGATCTGAAATCGAAATCGAAACCGAAACTGAAGAGAGAGACAAAAAAATGAGGGAGCCATCGTCGGTGGGATTCGAAGGCAACGGCGCCGTTTCTTCGCCGCCGCAAGCTCTCCTCGAGAGACTGAAAGACTACGGTCAAGAAGACGCTTTCGCCCTCTGGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGTGGAGGAGAGAAGCCAAGAGGATCGAGAGAGATGGTGGAAAATGGGATTGAAGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTCGAGGCAGAACAGGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGATTTATTATGGAGACTCCATACAGGGTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAGCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTAGTTCGAGTTGCCGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGCAAGGCATATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACCGTAGTGGAATACAGTGAGTTGGACCAGTCACTAGCTTCTGCAGTCAATCAAGCAACTGGCCGTCTTCGTTTTTGTTGGAGTAATGTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTCGTTGGGTAGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGGTAGGTTATTTACTCTTTATTTCCAAGGAGAAGAAATATAGTTGCGGCCGGACTCTTACCCAGACATATGTATACACACATGGAGAGAATATGTGACATAAATAGATGGAGAGATAGTATATTTTTTGTTAGAAAAATGATGGTCTTATCTAACTCTTTTTCTTTTCATGAAATGTCCCTGCCCTTA

Coding sequences of Glyma05g26240

Limit To All Plant Sequences

>Glyma05g26240.1   sequence type=CDS   gene model=Glyma05g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAGCCATCGTCGGTGGGATTCGAAGGCAACGGCGCCGTTTCTTCGCCGCCGCAAGCTCTCCTCGAGAGACTGAAAGACTACGGTCAAGAAGACGCTTTCGCCCTCTGGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGTGGAGGAGAGAAGCCAAGAGGATCGAGAGAGATGGTGGAAAATGGGATTGAAGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTCGAGGCAGAACAGGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGATTTATTATGGAGACTCCATACAGGGTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAGCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTAGTTCGAGTTGCCGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGCAAGGCATATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACCGTAGTGGAATACAGTGAGTTGGACCAGTCACTAGCTTCTGCAGTCAATCAAGCAACTGGCCGTCTTCGTTTTTGTTGGAGTAATGTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTCGTTGGGTAGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCTATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCATTTTAG

>Glyma05g26240.2   sequence type=CDS   gene model=Glyma05g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAGCCATCGTCGGTGGGATTCGAAGGCAACGGCGCCGTTTCTTCGCCGCCGCAAGCTCTCCTCGAGAGACTGAAAGACTACGGTCAAGAAGACGCTTTCGCCCTCTGGTACGAGCTCTCTTACGAGGAACGCGAGTTTCTCATCAAGGACATTGAGAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGTGGAGGAGAGAAGCCAAGAGGATCGAGAGAGATGGTGGAAAATGGGATTGAAGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAATTCTGCTTCTTCAGTGCAAATACACTGGTACATCATGACCAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTCGAGGCAGAACAGGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGATTTATTATGGAGACTCCATACAGGGTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAGCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTAGTTCGAGTTGCCGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGCAAGGCATATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACCGTAGTGGAATACAGTGAGTTGGACCAGTCACTAGCTTCTGCAGTCAATCAAGCAACTGGCCGTCTTCGTTTTTGTTGGAGTAATGTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTCGTTGGGTAGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGGTAGGTTATTTACTCTTTATTTCCAAGGAGAAGAAATATAG

Predicted protein sequences of Glyma05g26240

Limit To All Plant Sequences

>Glyma05g26240.1   sequence type=predicted peptide   gene model=Glyma05g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREPSSVGFEGNGAVSSPPQALLERLKDYGQEDAFALWYELSYEEREFLIKDIESLDLSRIDRIIRCSLRSQGLPAAAIEPVPESSVSTVEERSQEDRERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCAQRLAAQATNENSASSVQIHWYIMTSPFTDEATRKFFESHKFFGLEAEQVTFFQQGTIPCVSKDGRFIMETPYRVAKAPDGNGGVYSALKSTKLLEDMASKGIKYIDCYGVDNALVRVADPTFLGYFIDKGVAAAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQSLASAVNQATGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPTTALFEVLREEEFAPVKNANGSNVDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEPICRGRTFHAPCEISF*

>Glyma05g26240.2   sequence type=predicted peptide   gene model=Glyma05g26240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREPSSVGFEGNGAVSSPPQALLERLKDYGQEDAFALWYELSYEEREFLIKDIESLDLSRIDRIIRCSLRSQGLPAAAIEPVPESSVSTVEERSQEDRERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCAQRLAAQATNENSASSVQIHWYIMTSPFTDEATRKFFESHKFFGLEAEQVTFFQQGTIPCVSKDGRFIMETPYRVAKAPDGNGGVYSALKSTKLLEDMASKGIKYIDCYGVDNALVRVADPTFLGYFIDKGVAAAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQSLASAVNQATGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPTTALFEVLREEEFAPVKNANGSNVDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGRLFTLYFQGEEI*

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