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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G59180 | AT | Annotation by Michelle Graham. TAIR10: DNA-directed RNA polymerase II | chr5:23883499-23884976 FORWARD LENGTH=176 | SoyBase | E_val: 3.00E-105 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005665 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, core complex | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG3298 | KOG | DNA-directed RNA polymerase subunit E' | JGI | ISS | |
| PTHR12709 | Panther | DNA-DIRECTED RNA POLYMERASE II, III | JGI | ISS | |
| PF00575 | PFAM | S1 RNA binding domain | JGI | ISS | |
| PF03876 | PFAM | RNA polymerase Rpb7-like, N-terminal domain | JGI | ISS | |
| UniRef100_I1K337 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K337_SOYBN | SoyBase | E_val: 2.00E-157 | ISS |
| UniRef100_P46279 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase II subunit RPB7 n=2 Tax=Glycine max RepID=RPB7_SOYBN | SoyBase | E_val: 1.00E-110 | ISS |
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Glyma05g26040 not represented in the dataset |
Glyma05g26040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g09000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g130300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g26040.6 sequence type=transcript gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAACTTAATTAGCTCGATAAAAAAAAGCTTCCTGCGCGAGATAGAGACTGAAGATTGAAGAACAGTCGTCGGCTCCTCGCTCGCCCTTCGCTGCTGCGCCATCACCGTGCCCTTCTCAAAGCGATTTTAACCTAACCGCGTTCTTTTTTTCTTCAGAAATCGAGCATAAGGATTTGAGGATTGAAGTATTGAACACCAAATCCTTTATACTTGTTGGGCAAGAAGGGAGGGAAAAAGGAGAAACACAAAAATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAAATACCCCTTTCTGTACTCGTGTATCGTATATAGTTTGCATGACTTGGATTTTTACACCGTAATCCTCTTCAGATATTATGTTGTCTTACTCGATCATTGAAAGTACTAAGTCGTTGAGTTTTTGGTTCCAGAATTAATTTTCAACTCCCACAAGTAATTTTGGGTAATTCCATCAAGCAAGATGAGCCAGTACTATTCCAATAAAATTGTTCGTTGCCAGTAAAATATAAAAAGCTGTTGACGTAGTATAAATGAGACTGGATGCAGAATTTTCGATATAGATTGTATATACTTTAATCAAATGATACAGATAAAATGGGAATTACTCGTTTTTGTCTAACAAAATATGTTTCAAC >Glyma05g26040.8 sequence type=transcript gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGCGAGATAGAGACTGAAGATTGAAGAACAGTCGTCGGCTCCTCGCTCGCCCTTCGCTGCTGCGCCATCACCGTGCCCTTCTCAAAGCGATTTTAACCTAACCGCGTTCTTTTTTTCTTCAGAAATCGAGCATAAGGATTTGAGGATTGAAGTATTGAACACCAAATCCTTTATACTTGTGAGTTTTTGTTGCGTCAAATTCTTCAATTGAAAACTTTGTTATTAGGAATTAGAATCACACTGCGTTCCTCACTGATTGTGTGACCGTAGTGTTCTACATAAATTTTTAGGGCCATATATCACGTTGTCTCTCACTTCGGCTAAATTTCACCATTTCACACACTAACCACACTTTTCTTTTGCATCTCCAACTCCACTCCACCCGTTGCCCTAGCTGAGTTTCGCGTTGGTATACGCAGTGTTATTGATCCTATTCTTGGGGTAACAATGCAAGCTCTATATTGGTCCTGTTGCTGGCATTTAGTGTAACAATCTCTGTAACTCTGTTTGGAACTGTATTGAGGAATATTGAACATAAACTCCATTGGGTTCTCCATTTGTCGGTTCTCGTGTAATTATATGCGACAATTTTTCTCATTTTATTCTCTTTATCTTTTCTTCTTTTGTGTTTTGTGGCCCGGAGTGACTGTCCAGGTTGGGCAAGAAGGGAGGGAAAAAGGAGAAACACAAAAATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAAATACCCCTTTCTGTACTCGTGTATCGTATATAGTTTGCATGACTTGGATTTTTACACCGTAATCCTCTTCAGATATTATGTTGTCTTACTCGATCATTGAAAGTACTAAGTCGTTGAGTTTTTGGTTCCAGAATTAATTTTCAACTCCCACAAGTAATTTTGGGTAATTCCATCAAGCAAGATGAGCCAGTACTATTCCAATAAAATTGTTCGTTGCCAGTAAAATATAAAAAGCTGTTGACGTAGT >Glyma05g26040.9 sequence type=transcript gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGCGAGATAGAGACTGAAGATTGAAGAACAGTCGTCGGCTCCTCGCTCGCCCTTCGCTGCTGCGCCATCACCGTGCCCTTCTCAAAGCGATTTTAACCTAACCGCGTTCTTTTTTTCTTCAGAAATCGAGCATAAGGATTTGAGGATTGAAGTATTGAACACCAAATCCTTTATACTTTGACTGTCCAGGTTGGGCAAGAAGGGAGGGAAAAAGGAGAAACACAAAAATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAAATACCCCTTTCTGTACTCGTGTATCGTATATAGTTTGCATGACTTGGATTTTTACACCGTAATCCTCTTCAGATATTATGTTGTCTTACTCGATCATTGAAAGTACTAAGTCGTTGAGTTTTTGGTTCCAGAATTAATTTTCAACTCCCACAAGTAATTTTGGGTAATTCCATCAAGCAAGATGAGCCAGTACTATTCCAATAAAATTGTTCGTTGCCAGTAAAATATAAAAAGCTGTTGACGTAGT
>Glyma05g26040.1 sequence type=CDS gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTGTATGCCTATATATATTATGCCTTTTACTTCATTTTGTTGAATGCTGTTTAGTTAAGCTCCATCAGCGTTATGCTAAATTCTGCTTTAAGAAATTTAAATTAATAATAGGAAAGCAATTAGATATAGCTTTTGTTTCCCTGCAGATTTCTTCACTATTACAAATGCCTCTGAAAAGAGCCTGTTAG >Glyma05g26040.6 sequence type=CDS gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA >Glyma05g26040.8 sequence type=CDS gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA >Glyma05g26040.9 sequence type=CDS gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTTCCACATAGTGCTGGAGCGAAATATGCAGCTGCATCCACGCTACTTTGGTCGCAACCTTCGTGATAATCTCGTTTCCAAGCTAATGAAAGATGTGGAAGGCACTTGCAGCGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAAAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCGGTTAAGTACCAATGTGTTGTCTTCAGACCATTTAAGGGAGAGATCCTGGAAGCTGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACTGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA
>Glyma05g26040.1 sequence type=predicted peptide gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVCLYILCLLLHFVECCLVKLHQRYAKFCFKKFKLIIGKQLDIAFVSLQISSLLQMPLKRAC* >Glyma05g26040.6 sequence type=predicted peptide gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV* >Glyma05g26040.8 sequence type=predicted peptide gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV* >Glyma05g26040.9 sequence type=predicted peptide gene model=Glyma05g26040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV*
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