Glyma05g26000 - SoyBase

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Report for Sequence Feature Glyma05g26000

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32023616
stop:	32030563
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g26000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34460	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr2:14529635-14530732 FORWARD LENGTH=280	SoyBase	E_val: 2.00E-141	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1203	KOG	Predicted dehydrogenase	JGI		ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF135	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05368	PFAM	NmrA-like family	JGI		ISS
UniRef100_B6U1C8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-beta hydroxysteroid dehydrogenase/isomerase n=1 Tax=Zea mays RepID=B6U1C8_MAIZE	SoyBase	E_val: 8.00E-110	ISS
UniRef100_I1K333	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K333_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g26000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g26000

Paralog	Evidence	Comments
Glyma08g08940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g26000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g129900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g26000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g26000

Limit To All Plant Sequences

>Glyma05g26000.2   sequence type=transcript   gene model=Glyma05g26000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTGACCCTAACGTATCGCGTGATTGGTTCACGTGGCACGGTTATAACGTCTTGTTTGGGGAGGCTGGAAATTACAAGAATAATCTGGGTTCCACGGTGATGTCATGTCAATGGCTGCAACTCTCACTGCTGTAAGAATTCCCACTTTCCACCAACGCCATCTCAAACAACACTTCACGGCACCCTCTTCCTCTTCCTTACGCCTCCTCAATCTCGCAAAGATGGAAGGAAGTGAGATCAGTGAGCAAGTAGTAGGGGAGGATTTGGGAGCAAAGAAGAAAGTTTTTGTAGCTGGAGCCACTGGTAGCACTGGCAAAAGAATCGTTGAGCAGTTACTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTAGAGACATCGACAAGGCCAAGACAACCCTTTCCTCTGCCAACCCATCTCTTCAAATTGTGAAAGCTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAGGCCATTGGTGACGATTCAGAAGCAGTAGTATGTGCCACAGGCTTTCGCCCGGGGTGGGATTTACTTGCTCCCTGGAAGGTTGACAATTTTGGCACAGTAAACCTTGTTGAAGCATGCAGGAAACGCAATGTTAACAGATTCATTCTTATCAGTTCCATTTTAGTTAATGGAGCTGCTATGGGACAGTTACTGAATCCAGCTTACATCTTTCTTAATGTTTTTGGACTCACCTTGGTAGCGAAACTACAGGCAGAGAAATATATCAGGAAATCTGGTATAAACTATACAATAATAAGACCAGGCGGGTTGAGAAATGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGTAGTGCCTACGTTTCTGACTTTCTATTACATTCCCACAGTAGAATCTTAAGTTTATATTTTGTGGAACAATTGTTTAAAGATTTAAAAATTTGTGTATCAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCTAGTTGCTGAAGTGGCTGTGGAGGCATTGGCTTATCCTGAGGCATTTTATAAAGTTGTGGAAATAGTGTCTCGCCCTGATGCTCCTAAACGCCCATACCATGACCTTTTTGGTTCCATAAGGCAACAATGATGCCTGAGATTTGGACTTGATTGCAGATTAGCAAATGTTGATTTGCTTTATGGTGGCAAATTTGTATCTCAACTGTGTTCCTATGTGTGTTGTTTCATTCAATTGGTACACTAGAATAATGTGTAAATATTTCAGTATATCTTTAATTTTATTCTCCTACCTGCCAAATTAAAGGTTGGTAGATAATTCAGCACTAAAGATAAAGCTACTTCTGTTTAGCTAATTCAATTAGCACATGTTTGGGTAAACGACTTAATGAAGCACTTAATAAGCTCTTACCAAATGAGAGTTAGTCATAAGCTTATTGTAACAAGTTAAAAAGAGCTTAGTTTGATAAGTTTTTTTTTT

>Glyma05g26000.3   sequence type=transcript   gene model=Glyma05g26000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTGACCCTAACGTATCGCGTGATTGGTTCACGTGGCACGGTTATAACGTCTTGTTTGGGGAGGCTGGAAATTACAAGAATAATCTGGGTTCCACGGTGATGTCATGTCAATGGCTGCAACTCTCACTGCTGTAAGAATTCCCACTTTCCACCAACGCCATCTCAAACAACACTTCACGGCACCCTCTTCCTCTTCCTTACGCCTCCTCAATCTCGCAAAGGTAACAACTAACAACACATTACACCACAATCTTGTCTTCTTCTTTTTTTTTTTTTTCCTTTTCCTTTCCAGCATATGTGCATGTCAAAAACACACACTTGCCCTCTTATTTATTTTATGTTAGATGGAAGGAAGTGAGATCAGTGAGCAAGTAGTAGGGGAGGATTTGGGAGCAAAGAAGAAAGTTTTTGTAGCTGGAGCCACTGGTAGCACTGGCAAAAGAATCGTTGAGCAGTTACTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTAGAGACATCGACAAGGCCAAGACAACCCTTTCCTCTGCCAACCCATCTCTTCAAATTGTGAAAGCTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAGGCCATTGGTGACGATTCAGAAGCAGTAGTATGTGCCACAGGCTTTCGCCCGGGGTGGGATTTACTTGCTCCCTGGAAGGTTGACAATTTTGGCACAGTAAACCTTGTTGAAGCATGCAGGAAACGCAATGTTAACAGATTCATTCTTATCAGTTCCATTTTAGTTAATGGAGCTGCTATGGGACAGTTACTGAATCCAGCTTACATCTTTCTTAATGTTTTTGGACTCACCTTGGTAGCGAAACTACAGGCAGAGAAATATATCAGGAAATCTGGTATAAACTATACAATAATAAGACCAGGCGGGTTGAGAAATGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCTAGTTGCTGAAGTGGCTGTGGAGGCATTGGCTTATCCTGAGGCATTTTATAAAGTTGTGGAAATAGTGTCTCGCCCTGATGCTCCTAAACGCCCATACCATGACCTTTTTGGTTCCATAAGGCAACAATGATGCCTGAGATTTGGACTTGATTGCAGATTAGCAAATGTTGATTTGCTTTATGGTGGCAAATTTGTATCTCAACTGTGTTCCTATGTGTGTTGTTTCATTCAATTGGTACACTAGAATAATGTGTAAATATTTCAGTATATCTTTAATTTTATTCTCCTACCTGCCAAATTAAAGGTTGGTAGATAATTCAGCACTAAAGATAAAGCTACTTCTGTTTAGCTAATTCAATTAGCACATGTTTGGGTAAACGACTTAATGAAGCACTTAATAAGCTCTTACCAAATGAGAGTTAGTCATAAGCTTATTGTAACAAGTTAAAAAGAGCTTAGTTTGATAAGTTTTTTTTTT

Coding sequences of Glyma05g26000

Limit To All Plant Sequences

>Glyma05g26000.1   sequence type=CDS   gene model=Glyma05g26000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCTGCAACTCTCACTGCTGTAAGAATTCCCACTTTCCACCAACGCCATCTCAAACAACACTTCACGGCACCCTCTTCCTCTTCCTTACGCCTCCTCAATCTCGCAAAGATGGAAGGAAGTGAGATCAGTGAGCAAGTAGTAGGGGAGGATTTGGGAGCAAAGAAGAAAGTTTTTGTAGCTGGAGCCACTGGTAGCACTGGCAAAAGAATCGTTGAGCAGTTACTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTAGAGACATCGACAAGGCCAAGACAACCCTTTCCTCTGCCAACCCATCTCTTCAAATTGTGAAAGCTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAGGCCATTGGTGACGATTCAGAAGCAGTAGTATGTGCCACAGGCTTTCGCCCGGGGTGGGATTTACTTGCTCCCTGGAAGGTTGACAATTTTGGCACAGTAAACCTTGTTGAAGCATGCAGGAAACGCAATGTTAACAGATTCATTCTTATCAGTTCCATTTTAGTTAATGGAGCTGCTATGGGACAGTTACTGAATCCAGCTTACATCTTTCTTAATGTTTTTGGACTCACCTTGGTAGCGAAACTACAGGCAGAGAAATATATCAGGAAATCTGGTATAAACTATACAATAATAAGACCAGGCGGGTTGAGAAATGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCTAGTTGCTGAAGTGGCTGTGGAGGCATTGGCTTATCCTGAGGCATTTTATAAAGTTGTGGAAATAGTGTCTCGCCCTGATGCTCCTAAACGCCCATACCATGACCTTTTTGGTTCCATAAGGCAACAATGA

>Glyma05g26000.2   sequence type=CDS   gene model=Glyma05g26000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCTGCAACTCTCACTGCTGTAAGAATTCCCACTTTCCACCAACGCCATCTCAAACAACACTTCACGGCACCCTCTTCCTCTTCCTTACGCCTCCTCAATCTCGCAAAGATGGAAGGAAGTGAGATCAGTGAGCAAGTAGTAGGGGAGGATTTGGGAGCAAAGAAGAAAGTTTTTGTAGCTGGAGCCACTGGTAGCACTGGCAAAAGAATCGTTGAGCAGTTACTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTAGAGACATCGACAAGGCCAAGACAACCCTTTCCTCTGCCAACCCATCTCTTCAAATTGTGAAAGCTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAGGCCATTGGTGACGATTCAGAAGCAGTAGTATGTGCCACAGGCTTTCGCCCGGGGTGGGATTTACTTGCTCCCTGGAAGGTTGACAATTTTGGCACAGTAAACCTTGTTGAAGCATGCAGGAAACGCAATGTTAACAGATTCATTCTTATCAGTTCCATTTTAGTTAATGGAGCTGCTATGGGACAGTTACTGAATCCAGCTTACATCTTTCTTAATGTTTTTGGACTCACCTTGGTAGCGAAACTACAGGCAGAGAAATATATCAGGAAATCTGGTATAAACTATACAATAATAAGACCAGGCGGGTTGAGAAATGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGTAGTGCCTACGTTTCTGACTTTCTATTACATTCCCACAGTAGAATCTTAA

>Glyma05g26000.3   sequence type=CDS   gene model=Glyma05g26000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAGTGAGATCAGTGAGCAAGTAGTAGGGGAGGATTTGGGAGCAAAGAAGAAAGTTTTTGTAGCTGGAGCCACTGGTAGCACTGGCAAAAGAATCGTTGAGCAGTTACTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTAGAGACATCGACAAGGCCAAGACAACCCTTTCCTCTGCCAACCCATCTCTTCAAATTGTGAAAGCTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAGGCCATTGGTGACGATTCAGAAGCAGTAGTATGTGCCACAGGCTTTCGCCCGGGGTGGGATTTACTTGCTCCCTGGAAGGTTGACAATTTTGGCACAGTAAACCTTGTTGAAGCATGCAGGAAACGCAATGTTAACAGATTCATTCTTATCAGTTCCATTTTAGTTAATGGAGCTGCTATGGGACAGTTACTGAATCCAGCTTACATCTTTCTTAATGTTTTTGGACTCACCTTGGTAGCGAAACTACAGGCAGAGAAATATATCAGGAAATCTGGTATAAACTATACAATAATAAGACCAGGCGGGTTGAGAAATGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCTAGTTGCTGAAGTGGCTGTGGAGGCATTGGCTTATCCTGAGGCATTTTATAAAGTTGTGGAAATAGTGTCTCGCCCTGATGCTCCTAAACGCCCATACCATGACCTTTTTGGTTCCATAAGGCAACAATGA

Predicted protein sequences of Glyma05g26000

Limit To All Plant Sequences

>Glyma05g26000.1   sequence type=predicted peptide   gene model=Glyma05g26000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAATLTAVRIPTFHQRHLKQHFTAPSSSSLRLLNLAKMEGSEISEQVVGEDLGAKKKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDIDKAKTTLSSANPSLQIVKADVTEGSDKLAEAIGDDSEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAEKYIRKSGINYTIIRPGGLRNDPPTGNVVMEPEDTLYEGSISRDLVAEVAVEALAYPEAFYKVVEIVSRPDAPKRPYHDLFGSIRQQ*

>Glyma05g26000.2   sequence type=predicted peptide   gene model=Glyma05g26000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAATLTAVRIPTFHQRHLKQHFTAPSSSSLRLLNLAKMEGSEISEQVVGEDLGAKKKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDIDKAKTTLSSANPSLQIVKADVTEGSDKLAEAIGDDSEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAEKYIRKSGINYTIIRPGGLRNDPPTGNVVMEPEVVPTFLTFYYIPTVES*

>Glyma05g26000.3   sequence type=predicted peptide   gene model=Glyma05g26000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSEISEQVVGEDLGAKKKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDIDKAKTTLSSANPSLQIVKADVTEGSDKLAEAIGDDSEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAEKYIRKSGINYTIIRPGGLRNDPPTGNVVMEPEDTLYEGSISRDLVAEVAVEALAYPEAFYKVVEIVSRPDAPKRPYHDLFGSIRQQ*

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