Glyma05g25990 - SoyBase

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Report for Sequence Feature Glyma05g25990

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32021346
stop:	32023603
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16950	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:5572640-5572939 FORWARD LENGTH=99	SoyBase	E_val: 4.00E-24	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6SWY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWY2_SOYBN	SoyBase	E_val: 4.00E-61	ISS
UniRef100_G7KAM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase type B subunit n=1 Tax=Medicago truncatula RepID=G7KAM7_MEDTR	SoyBase	E_val: 7.00E-38	ISS

Expression Patterns of Glyma05g25990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g25990 not represented in the dataset	Glyma05g25990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25990

Paralog	Evidence	Comments
Glyma08g08930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g129800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g25990

Limit To All Plant Sequences

>Glyma05g25990.6   sequence type=transcript   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAAAACTAAACGGCGTCGTTTTTGGCTTGGACAAATTTTTTTCACAAAACAGAGAAGAGAGAACCCTCAGTCACCACTTCAATTGAAAGGAAAGCCTCACTCCCTCACCGGCGTCTGGAACTGGAAGCACCGTCGCAGTGATTGAGAACGTGCCTTACATTCCTATTCTGTATTGGAAAAGCAAACCCTAATATCTCTTCTTCCCCTTCAGCTCAGCTCTTGCTTCTTCCAAAGTTTTTGTTAATTCTGAGGTTTAGAGTATCGGCATTATGGGAAGCGAAGATGCGAAAGATCCATTCAAAGGGGTGGATTGGAAAGCCGTTGGTGGCGAGATGCAGCAAAATCCGAGTGCTAAACCTGCATTGAAGAAACGATTACCGAAGAAAGTTAGGGAAATTCCTGAATTCTATTTCCTTCCACGATGGCCGCTGCCCAAGGCCATTTTATTCTGCAGCGCATGCATTGGTGGTGGTGTAGCTGCTGGAATGCTTATTGAGACCTGGATTGAAAAGAAAGTTAAAGAAGATGGAGGGGTTATATGGGAGTTTGACAAATAAACTCTTGATGTTGGCACAATTATGTCACATATATTGCTGCCTTCTTTCATTTCCTCCTTCCCACAAATTGGTCTCTGGAGCAACCCTCTCTTCTCGGGAAGTTTCAGGGATTAGGGTGATTTAGAAGTTTCTTGTCCTTGGTTAGACTCTTGATTGAGTAGTTATCGTCAGTTGACAAGGAGATAACTTCCTTGTTTAAATTTTGGATTTTTTTTTTTACCTGAAACATGAAAAGGCAACTAGATGAACATAGTTTTGGTTACAGTTTATGCCTGGTCACTTATTCTATGACCCTAATTCTCTTTTTGGATTATGATCATTAAGAGTAGTACTTCATTTCCACATTTACTTCATTAATCGGATATGCTTATGTTCCACCTTACAAAAACCAGATACTTATCCTCGATGTCCTTGGATAGGATTGTGGTCCTGTGGAGCAACAAAATTGATATACTTTTCCTCTGTTAGCTCCTCGTAACATGCACGCTCTTCTGAGGAACCCACACGAATTGTATATTAATTATTGAACTTGTTTTTTTTAACAAGCTTAGTTATATTTTAAGAATACTATTTCAGAACTATTTAATATGTGGAATTATTTCGTT

>Glyma05g25990.7   sequence type=transcript   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAAAACTAAACGGCGTCGTTTTTGGCTTGGACAAATTTTTTTCACAAAACAGAGAAGAGAGAACCCTCAGTCACCACTTCAATTGAAAGGAAAGCCTCACTCCCTCACCGGCGTCTGGAACTGGAAGCACCGTCGCAGTGATTGAGAACGCTCAGCTCTTGCTTCTTCCAAAGTTTTTGTTAATTCTGAGGTTTAGAGTATCGGCATTATGGGAAGCGAAGATGCGAAAGATCCATTCAAAGGGGTGGATTGGAAAGCCGTTGGTGGCGAGATGCAGCAAAATCCGAGTGCTAAACCTGCATTGAAGAAACGATTACCGAAGAAAGTTAGGGAAATTCCTGAATTCTATTTCCTTCCACGATGGCCGCTGCCCAAGGCCATTTTATTCTGCAGCGCATGCATTGGTGGTGGTGTAGCTGCTGGAATGCTTATTGAGACCTGGATTGAAAAGAAAGTTAAAGAAGATGGAGGGGTTATATGGGAGTTTGACAAATAAACTCTTGATGTTGGCACAATTATGTCACATATATTGCTGCCTTCTTTCATTTCCTCCTTCCCACAAATTGGTCTCTGGAGCAACCCTCTCTTCTCGGGAAGTTTCAGGGATTAGGGTGATTTAGAAGTTTCTTGTCCTTGGTTAGACTCTTGATTGAGTAGTTATCGTCAGTTGACAAGGAGATAACTTCCTTGTTTAAATTTTGGATTTTTTTTTTTACCTGAAACATGAAAAGGCAACTAGATGAACATAGTTTTGGTTACAGTTTATGCCTGGTCACTTATTCTATGACCCTAATTCTCTTTTTGGATTATGATCATTAAGAGTAGTACTTCATTTCCACATTTACTTCATTAATCGGATATGCTTATGTTCCACCTTACAAAAACCAGATACTTATCCTCGATGTCCTTGGATAGGATTGTGGTCCTGTGGAGCAACAAAATTGATATACTTTTCCTCTGTTAGCTCCTCGTAACATGCACGCTCTTCTGAGGAACCCACACGAATTGTATATTAATTATTGAACTTGTTTTTTTTAACAAGCTTAGTTATATTTTAAGAATACTATTTCAGAACTATTTAATATGTGGAATTATTTCGTT

>Glyma05g25990.8   sequence type=transcript   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTCGTTTTTGGCTTGGACAAATTTTTTTCACAAAACAGAGAAGAGAGAACCCTCAGTCACCACTTCAATTGAAAGGAAAGCCTCACTCCCTCACCGGCGTCTGGAACTGGAAGCACCGTCGCAGTGATTGAGAACGGTAATAGTATTTTTGCTTTAGCCGGATAAAGACTTTGAATTTTTCGATAATGTGAAAGGAGAATAATACATAATGTTTGTTTGTTGGTTGGCTGGAATATTAGTGCCTTACATTCCTATTCTGTATTGGAAAAGCAAACCCTAATATCTCTTCTTCCCCTTCAGCTCAGCTCTTGCTTCTTCCAAAGTTTTTGGTATTTCACTCAATCTCATTGGATTTTCTTGTTATTCTTTCTTTATCTCAGTGTTCTGTTTGAAAAACCAAGTGATTTTTATTTCCTTTTGGTTGCAGTTAATTCTGAGGTTTAGAGTATCGGCATTATGGGAAGCGAAGATGCGAAAGATCCATTCAAAGGGGTGGATTGGAAAGCCGTTGGTGGCGAGATGCAGCAAAATCCGAGTGCTAAACCTGCATTGAAGAAACGATTACCGAAGAAAGTTAGGGAAATTCCTGAATTCTATTTCCTTCCACGATGGCCGCTGCCCAAGGCCATTTTATTCTGCAGCGCATGCATTGGTGGTGGTGTAGCTGCTGGAATGCTTATTGAGACCTGGATTGAAAAGAAAGTTAAAGAAGATGGAGGGGTTATATGGGAGTTTGACAAATAAACTCTTGATGTTGGCACAATTATGTCACATATATTGCTGCCTTCTTTCATTTCCTCCTTCCCACAAATTGGTCTCTGGAGCAACCCTCTCTTCTCGGGAAGTTTCAGGGATTAGGGTGATTTAGAAGTTTCTTGTCCTTGGTTAGACTCTTGATTGAGTAGTTATCGTCAGTTGACAAGGAGATAACTTCCTTGTTTAAATTTTGGATTTTTTTTTTTACCTGAAACATGAAAAGGCAACTAGATGAACATAGTTTTGGTTACAGTTTATGCCTGGTCACTTATTCTATGACCCTAATTCTCTTTTTGGATTATGATCATTAAGAGTAGTACTTCATTTCCACATTTACTTCATTAATCGGATATGCTTATGTTCCACCTTACAAAAACCAGATACTTATCCTCGATGTCCTTGGATAGGATTG

Coding sequences of Glyma05g25990

Limit To All Plant Sequences

>Glyma05g25990.5   sequence type=CDS   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCGAAGATGCGAAAGATCCATTCAAAGGGGTGGATTGGAAAGCCGTTGGTGGCGAGATGCAGCAAAATCCGAGTGCTAAACCTGCATTGAAGAAACGATTACCGAAGAAAGTTAGGGAAATTCCTGAATTCTATTTCCTTCCACGATGGCCGCTGCCCAAGGCCATTTTATTCTGCAGCGCATGCATTGGTGGTGGTGTAGCTGCTGGAATGCTTATTGAGACCTGGATTGAAAAGAAAGTTAAAGAAGATGGAGGGGTTATATGGGAGTTTGACAAATAA

>Glyma05g25990.6   sequence type=CDS   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCGAAGATGCGAAAGATCCATTCAAAGGGGTGGATTGGAAAGCCGTTGGTGGCGAGATGCAGCAAAATCCGAGTGCTAAACCTGCATTGAAGAAACGATTACCGAAGAAAGTTAGGGAAATTCCTGAATTCTATTTCCTTCCACGATGGCCGCTGCCCAAGGCCATTTTATTCTGCAGCGCATGCATTGGTGGTGGTGTAGCTGCTGGAATGCTTATTGAGACCTGGATTGAAAAGAAAGTTAAAGAAGATGGAGGGGTTATATGGGAGTTTGACAAATAA

>Glyma05g25990.7   sequence type=CDS   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCGAAGATGCGAAAGATCCATTCAAAGGGGTGGATTGGAAAGCCGTTGGTGGCGAGATGCAGCAAAATCCGAGTGCTAAACCTGCATTGAAGAAACGATTACCGAAGAAAGTTAGGGAAATTCCTGAATTCTATTTCCTTCCACGATGGCCGCTGCCCAAGGCCATTTTATTCTGCAGCGCATGCATTGGTGGTGGTGTAGCTGCTGGAATGCTTATTGAGACCTGGATTGAAAAGAAAGTTAAAGAAGATGGAGGGGTTATATGGGAGTTTGACAAATAA

>Glyma05g25990.8   sequence type=CDS   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCGAAGATGCGAAAGATCCATTCAAAGGGGTGGATTGGAAAGCCGTTGGTGGCGAGATGCAGCAAAATCCGAGTGCTAAACCTGCATTGAAGAAACGATTACCGAAGAAAGTTAGGGAAATTCCTGAATTCTATTTCCTTCCACGATGGCCGCTGCCCAAGGCCATTTTATTCTGCAGCGCATGCATTGGTGGTGGTGTAGCTGCTGGAATGCTTATTGAGACCTGGATTGAAAAGAAAGTTAAAGAAGATGGAGGGGTTATATGGGAGTTTGACAAATAA

Predicted protein sequences of Glyma05g25990

Limit To All Plant Sequences

>Glyma05g25990.5   sequence type=predicted peptide   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEDAKDPFKGVDWKAVGGEMQQNPSAKPALKKRLPKKVREIPEFYFLPRWPLPKAILFCSACIGGGVAAGMLIETWIEKKVKEDGGVIWEFDK*

>Glyma05g25990.6   sequence type=predicted peptide   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEDAKDPFKGVDWKAVGGEMQQNPSAKPALKKRLPKKVREIPEFYFLPRWPLPKAILFCSACIGGGVAAGMLIETWIEKKVKEDGGVIWEFDK*

>Glyma05g25990.7   sequence type=predicted peptide   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEDAKDPFKGVDWKAVGGEMQQNPSAKPALKKRLPKKVREIPEFYFLPRWPLPKAILFCSACIGGGVAAGMLIETWIEKKVKEDGGVIWEFDK*

>Glyma05g25990.8   sequence type=predicted peptide   gene model=Glyma05g25990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEDAKDPFKGVDWKAVGGEMQQNPSAKPALKKRLPKKVREIPEFYFLPRWPLPKAILFCSACIGGGVAAGMLIETWIEKKVKEDGGVIWEFDK*

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