Glyma05g25970 - SoyBase

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Report for Sequence Feature Glyma05g25970

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32006635
stop:	32013045
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46290	AT	Annotation by Michelle Graham. TAIR10: 3-ketoacyl-acyl carrier protein synthase I \| chr5:18774439-18776629 REVERSE LENGTH=473	SoyBase	E_val: 0	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0010020	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast fission	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004312	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty acid synthase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
KOG1394	KOG	3-oxoacyl-(acyl-carrier-protein) synthase (I and II)	JGI		ISS
PTHR11712	Panther	POLYKETIDE SYNTHASE-RELATED	JGI		ISS
PTHR11712:SF52	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00109	PFAM	Beta-ketoacyl synthase, N-terminal domain	JGI		ISS
PF02801	PFAM	Beta-ketoacyl synthase, C-terminal domain	JGI		ISS
UniRef100_Q9M507	UniRef	Annotation by Michelle Graham. Best UniRef hit: Beta-ketoacyl-ACP synthetase I-2 n=1 Tax=Glycine max RepID=Q9M507_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M507	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-ketoacyl-ACP synthetase I-2 n=1 Tax=Glycine max RepID=Q9M507_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g25970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25970

Paralog	Evidence	Comments
Glyma08g08910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g129600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25970

Limit To All Plant Sequences

>Glyma05g25970.1   sequence type=CDS   gene model=Glyma05g25970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGCGCTTCATTCCCCCACCCTCCGCACTTCTCCCTTGGACCCTCTTCGGGGCCCCAACAATGCCGCCGCCAAGCGACGCGCCTCCTCTGCCAAGCGCGTGTTCTTCGTGTCCGCCACGGTGGCGCCGAAGGTGTCCGCCCCGCAGCGGCAGAAGGACTCGAAGAAGCGCGTGGTTATCACGGGAATGGGGCTCGCGTCGGTGTTCGGGAACGACGTGGAGGGGTACTACGAGAAGCTTCTCGCCGGCGAGAGCGGCATCACCCCCATCGACCGCTTCGACGCCTCCAAGTTTCCCACGCGCTTCGGCGGCCAGATCCGCGGCTTCTCCGCCGAGGGCTACATCGACGGCAAGAACGACCGCCGCCTCGACGACTGCCTCCGCTACTGCATTGTCGCCGGCAAAAAGGCCCTCGAAAACGCCGACCTTGCCCCAGACAACCACTCCAAGATTGATAAGGAGCGTGCTGGTGTTCTTGTAGGCTCCGGAATGGGAGGTTTAACGGTGTTTTCTGACGGTGTTCAGGCTCTGATTGAGAAGGGGCACAGGAAGATAACGCCGTTTTTTATTCCGTATGCCATTACTAACATGGGTTCGGCTTTGCTTGGGATAGACCTTGGGTTCATGGGTCCCAACTATTCTATATCCACGGCTTGTGCTACCTCCAACTATTGCTTTTATGCTGCGGCGAACCATATTCGGAGAGGGGAGGCTGATTTGATGATTGCGGGTGGGACTGAGGCTGCCATTATTCCAATTGGGTTAGGGGGTTTCGTTGCTTGCAGGGCGCTTTCGCAGAGGAATGATGACCCCAAAACTGCTTCCAGGCCGTGGGATAAGGACCGTGATGGCTTTGTTATGGGCGAAGGTGCTGGAGTTTTGGTAATGGAGAGCTTGGAACATGCCATGAAGCGAGGCGCACCTATTATTGCTGAATACTTGGGAGGTGCTGTTAACTGTGATGCTTATCACATGACTGATCCAAGGTCTGATGGACTTGGTGTGTCTACATGCATTCAGAGCAGCCTTGAAGATGCGGGTGTGTCACCAGAGGAGGTCAACTACATAAATGCACATGCAACTTCCACTCTTGCTGGAGACTTGGCAGAGATCAATGCTATTAAAAAGGTTTTCAAGGACACTTCTGGAATCAAAATTAATGCAACCAAGTCTATGATAGGGCACTGCCTTGGTGCAGCTGGGGGTTTGGAAGCCATTGCCACAGTGAAAGCCATAACAACAGGATGGCTGCATCCAACAATCAATCAATTTAACCCAGAACCTGCAGTTGATTTTGATACAGTGGCAAATGTCAAGCAGCAGCATGAAATCAACGTTGCCATTTCAAATTCATTTGGATTCGGTGGACACAACTCTGTGGTAGCATTTTCTGCTTTCAGGCCTTGA

Predicted protein sequences of Glyma05g25970

Limit To All Plant Sequences

>Glyma05g25970.1   sequence type=predicted peptide   gene model=Glyma05g25970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQALHSPTLRTSPLDPLRGPNNAAAKRRASSAKRVFFVSATVAPKVSAPQRQKDSKKRVVITGMGLASVFGNDVEGYYEKLLAGESGITPIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALENADLAPDNHSKIDKERAGVLVGSGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLGIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMIAGGTEAAIIPIGLGGFVACRALSQRNDDPKTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSTCIQSSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKDTSGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPTINQFNPEPAVDFDTVANVKQQHEINVAISNSFGFGGHNSVVAFSAFRP*

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