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Report for Sequence Feature Glyma05g25960

Feature Type:gene_model
Chromosome:Gm05
Start:31999702
stop:32003022
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g25960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29950AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:10493461-10494216 FORWARD LENGTH=251 SoyBaseE_val: 4.00E-39ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
UniRef100_G7JDY6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH144 n=2 Tax=Medicago truncatula RepID=G7JDY6_MEDTR SoyBaseE_val: 3.00E-107ISS
UniRef100_I1K326UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K326_SOYBN SoyBaseE_val: 9.00E-177ISS

Expression Patterns of Glyma05g25960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25960
ParalogEvidenceComments
Glyma08g08900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g129400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g25960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g25960
>Glyma05g25960.1   sequence type=CDS   gene model=Glyma05g25960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGACTCAGGAATATTTTCTCCCGGATAAGATGGTACTTCCTTTGGCAGATGAGGCCATTGATCCTCATATGCGTGCTCCACTTGCTTCTGCCTTTGATGCATATTTACCTCCAGGTGTGAGGCAGATAACACCCTTCGAAAGATTTAATGTGCAACCCTCTGAGGCTTGCCCCAAGAACTTTGTTATCTTTGATCAAACAGATCAACGAAGCAGGATCATGTTCCATCCTGCAATGACCTACAAATTTAACAGTCCTGGCTTAAATGTTCATGCTACTGGTTCTCAAGATTTTGAGAAAAATAAAGCCAATCAAATGGAAAGAGAAGTGTCATCTCCTTTTGAAGAAGATCCTAATGACATTGACGCATTGTTGAGCATAGGAGTGGATGAACTAGATGACTTTGACGAGGAAGAAGTCAGCACAGCAAGGACTCAAGAAAATTATGAAAGTTTATCCGATACTTGCTCCAGTTATTGCTCAAAATCAAGGAAGAGGTCATCGTCATCTTCTGTACAGAAGTCGTCTGGGGCCGGGGGTTTCTGCCACAATGAAGGGAAGCACTGGGAGATGAAGAGGATGGTGAGGATGTTGAGAAAGATTGTGCCAGGTGGAGGTAATCAAATGGATTCTGTTGCTGTTTTAGATGAAGCTGTAAAATACCTCAAGTCTCTCAAAGTTGAGGTTGAACAATTCGGGGTTGAACCATGA
Predicted protein sequences of Glyma05g25960
>Glyma05g25960.1   sequence type=predicted peptide   gene model=Glyma05g25960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTQEYFLPDKMVLPLADEAIDPHMRAPLASAFDAYLPPGVRQITPFERFNVQPSEACPKNFVIFDQTDQRSRIMFHPAMTYKFNSPGLNVHATGSQDFEKNKANQMEREVSSPFEEDPNDIDALLSIGVDELDDFDEEEVSTARTQENYESLSDTCSSYCSKSRKRSSSSSVQKSSGAGGFCHNEGKHWEMKRMVRMLRKIVPGGGNQMDSVAVLDEAVKYLKSLKVEVEQFGVEP*






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