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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G59090 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:21839334-21842348 FORWARD LENGTH=367 | SoyBase | E_val: 3.00E-100 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PF06454 | PFAM | Protein of unknown function (DUF1084) | JGI | ISS | |
| UniRef100_B9DFZ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT3G59090 protein n=1 Tax=Arabidopsis thaliana RepID=B9DFZ1_ARATH | SoyBase | E_val: 1.00E-97 | ISS |
| UniRef100_UPI00023399A9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023399A9 related cluster n=1 Tax=unknown RepID=UPI00023399A9 | SoyBase | E_val: 0 | ISS |
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Glyma05g25941 not represented in the dataset |
Glyma05g25941 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g08885 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g129300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g25941.2 sequence type=transcript gene model=Glyma05g25941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGTATTTTAGCAAATTCTAATACTTTATTATTAATATTTATTTCATTTTATTTTCTATCGATGCCCTTCACTAAATCAGCGAAAGTGTGTCACGTTTGTTGATGCTGTTGTTATTGTTGATGGTGTTGCGGTGAAAGAATCTGCGATACGATACGCACACACATCATCATCACATGCATATTATGCGTATATACGCGTAGATCTGGAAGAGAGGGTAGAAAGAACAGAGAGAGAAGAAGAACAACAACGCAAAGCGGTGTTCGTTCCGTACGCACTCGCGCACGCACGCACGCACGCACGAGGCCATGTCGGGATTCAGAGACACTCACGGTTTTCCTCGTCCAATCCTCGCTGTGAATCTCGCTCTCGCTCTTCTCCACGCCGCCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGGCAAAAGGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTATGTCATTTATTTGGCATTGACAATTGTTGCTTCCTGCAAGGGATGGACCTGTTGGTCGCACTCTTGTGGTTTCATATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGACAACCCTTTGCTGGAGAAGACTTTAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGCTTTCCTTTTCGGTTTGCTCGTGTTGGAAATCGGCAAAAAATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGCTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGGATGCTTTTGTTGGGAGGAGCATTAGCATGCTATGGAATTCTATTATGCTTGAAAATGAGCAAAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTAATATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGACATCCCTATGCAGTATAACTGGCATCAGCGGCGTCTGAATGATGTTTACTCCTCTCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCAGTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATACCCGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGGCTACAGCAACAAGCATGCAGAATCAGAAAATTATTTTTTAATATGAACATGGAATGCTTGACTTTGACAGGCAGCACTTTAAGATTCACATTCATATTGTTTCCTACAAGTGTCATCGCACAAGACATCAAGAGCGAGTCCTATATGATTATGCATTAACCTTTGCAAATATATCTTGGTCTGCTGGAGTTTGGACAGCTTAATGGAATTTCCTCAGGATGTTTAACCCTAGAGCGCAGAAGAGAGAAAATGATAATGATGGATGCAAGTTCTCAAGGGACTTGAGGTTTCCCTTCCCACTGTATTTACAATCTAAATCTAAATGTATATAGCAGCAATTTGATATATGAAAAGTTCTTTTCCTTCTATACAAATTTTGGTACACTACTGTTTCAATGCTGGTTGGGTATTTTTCTGAGTTTGAATGATTCCCTTCTGATGTGAATATGACTGTTGCAGAGTGAGCATATTCTTCTATCCTGCTTGCAAGCTGAATTATCTGTGTCGAGAAGGATATTTTGACTGGACTTCGAAAATTCACGTTAGCAGGGC >Glyma05g25941.3 sequence type=transcript gene model=Glyma05g25941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGTATTTTAGCAAATTCTAATACTTTATTATTAATATTTATTTCATTTTATTTTCTATCGATGCCCTTCACTAAATCAGCGAAAGTGTGTCACGTTTGTTGATGCTGTTGTTATTGTTGATGGTGTTGCGGTGAAAGAATCTGCGATACGATACGCACACACATCATCATCACATGCATATTATGCGTATATACGCGTAGATCTGGAAGAGAGGGTAGAAAGAACAGAGAGAGAAGAAGAACAACAACGCAAAGCGGTGTTCGTTCCGTACGCACTCGCGCACGCACGCACGCACGCACGAGGCCATGTCGGGATTCAGAGACACTCACGGTTTTCCTCGTCCAATCCTCGCTGTGAATCTCGCTCTCGCTCTTCTCCACGCCGCCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGGCAAAAGGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTATGTCATTTATTTGGCATTGACAATTGTTGCTTCCTGCAAGGGATGGACCTGTTGGTCGCACTCTTGTGGTTTCATATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGACAACCCTTTGCTGGAGAAGACTTTAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGCTTTCCTTTTCGGTTTGCTCGTGTTGGAAATCGGCAAAAAATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGCTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGGATGCTTTTGTTGGGAGGAGCATTAGCATGCTATGGAATTCTATTATGCTTGAAAATGAGCAAAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTAATATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGACATCCCTATGCAGTATAACTGGCATCAGCGGCGTCTGAATGATGTTTACTCCTCTCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCAGTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATACCCGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGGCTACAGCAACAAGCATGCAGAATCAGGCAGCACTTTAAGATTCACATTCATATTGTTTCCTACAAGTGTCATCGCACAAGACATCAAGAGCGAGTCCTATATGATTATGCATTAACCTTTGCAAATATATCTTGGTCTGCTGGAGTTTGGACAGCTTAATGGAATTTCCTCAGGATGTTTAACCCTAGAGCGCAGAAGAGAGAAAATGATAATGATGGATGCAAGTTCTCAAGGGACTTGAGGTTTCCCTTCCCACTGTATTTACAATCTAAATCTAAATGTATATAGCAGCAATTTGATATATGAAAAGTTCTTTTCCTTCTATACAAATTTTGGTACACTACTGTTTCAATGCTG
>Glyma05g25941.1 sequence type=CDS gene model=Glyma05g25941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGGATTCAGAGACACTCACGGTTTTCCTCGTCCAATCCTCGCTGTGAATCTCGCTCTCGCTCTTCTCCACGCCGCCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGGCAAAAGGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTATGTCATTTATTTGGCATTGACAATTGTTGCTTCCTGCAAGGGATGGACCTGTTGGTCGCACTCTTGTGGTTTCATATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGACAACCCTTTGCTGGAGAAGACTTTAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGCTTTCCTTTTCGGTTTGCTCGTGTTGGAAATCGGCAAAAAATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGCTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGGATGCTTTTGTTGGGAGGAGCATTAGCATGCTATGGAATTCTATTATGCTTGAAAATGAGCAAAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTAATATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGACATCCCTATGCAGTATAACTGGCATCAGCGGCGTCTGAATGATGTTTACTCCTCTCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCAGTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATACCCGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGGCTACAGCAACAAGCATGCAGAATCAGACATCAAGAGCGAGTCCTATATGA >Glyma05g25941.2 sequence type=CDS gene model=Glyma05g25941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGGATTCAGAGACACTCACGGTTTTCCTCGTCCAATCCTCGCTGTGAATCTCGCTCTCGCTCTTCTCCACGCCGCCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGGCAAAAGGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTATGTCATTTATTTGGCATTGACAATTGTTGCTTCCTGCAAGGGATGGACCTGTTGGTCGCACTCTTGTGGTTTCATATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGACAACCCTTTGCTGGAGAAGACTTTAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGCTTTCCTTTTCGGTTTGCTCGTGTTGGAAATCGGCAAAAAATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGCTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGGATGCTTTTGTTGGGAGGAGCATTAGCATGCTATGGAATTCTATTATGCTTGAAAATGAGCAAAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTAATATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGACATCCCTATGCAGTATAACTGGCATCAGCGGCGTCTGAATGATGTTTACTCCTCTCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCAGTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATACCCGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGGCTACAGCAACAAGCATGCAGAATCAGAAAATTATTTTTTAA >Glyma05g25941.3 sequence type=CDS gene model=Glyma05g25941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGGATTCAGAGACACTCACGGTTTTCCTCGTCCAATCCTCGCTGTGAATCTCGCTCTCGCTCTTCTCCACGCCGCCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGGCAAAAGGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTATGTCATTTATTTGGCATTGACAATTGTTGCTTCCTGCAAGGGATGGACCTGTTGGTCGCACTCTTGTGGTTTCATATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGACAACCCTTTGCTGGAGAAGACTTTAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGCTTTCCTTTTCGGTTTGCTCGTGTTGGAAATCGGCAAAAAATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGCTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGGATGCTTTTGTTGGGAGGAGCATTAGCATGCTATGGAATTCTATTATGCTTGAAAATGAGCAAAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTAATATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGACATCCCTATGCAGTATAACTGGCATCAGCGGCGTCTGAATGATGTTTACTCCTCTCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCAGTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATACCCGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGGCTACAGCAACAAGCATGCAGAATCAGGCAGCACTTTAA
>Glyma05g25941.1 sequence type=predicted peptide gene model=Glyma05g25941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGFRDTHGFPRPILAVNLALALLHAAVAFLAFFQLLRIHMRNAQLGWTRQKVFHVLIGSSNLGYVIYLALTIVASCKGWTCWSHSCGFIFMAFPKVLFFAAFLLLLSFWVDLCHQADDDDDYEGSFCDNPLLEKTLNESNLASIDSHRKCFPFRFARVGNRQKIVILVTLLVFIIVVAFAVVIWIGLGKNPIDSEVAARIYLYLSAIGMLLLGGALACYGILLCLKMSKVRAEKPSSEMWKVAGLTIVSVICFTSSSCVELLTDIPMQYNWHQRRLNDVYSSLLLILYYFVGSSIPSAVVLWVMRELPPEEAASIPEESSTIAFVADSSIAIHHPQRWATATSMQNQTSRASPI* >Glyma05g25941.2 sequence type=predicted peptide gene model=Glyma05g25941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGFRDTHGFPRPILAVNLALALLHAAVAFLAFFQLLRIHMRNAQLGWTRQKVFHVLIGSSNLGYVIYLALTIVASCKGWTCWSHSCGFIFMAFPKVLFFAAFLLLLSFWVDLCHQADDDDDYEGSFCDNPLLEKTLNESNLASIDSHRKCFPFRFARVGNRQKIVILVTLLVFIIVVAFAVVIWIGLGKNPIDSEVAARIYLYLSAIGMLLLGGALACYGILLCLKMSKVRAEKPSSEMWKVAGLTIVSVICFTSSSCVELLTDIPMQYNWHQRRLNDVYSSLLLILYYFVGSSIPSAVVLWVMRELPPEEAASIPEESSTIAFVADSSIAIHHPQRWATATSMQNQKIIF* >Glyma05g25941.3 sequence type=predicted peptide gene model=Glyma05g25941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGFRDTHGFPRPILAVNLALALLHAAVAFLAFFQLLRIHMRNAQLGWTRQKVFHVLIGSSNLGYVIYLALTIVASCKGWTCWSHSCGFIFMAFPKVLFFAAFLLLLSFWVDLCHQADDDDDYEGSFCDNPLLEKTLNESNLASIDSHRKCFPFRFARVGNRQKIVILVTLLVFIIVVAFAVVIWIGLGKNPIDSEVAARIYLYLSAIGMLLLGGALACYGILLCLKMSKVRAEKPSSEMWKVAGLTIVSVICFTSSSCVELLTDIPMQYNWHQRRLNDVYSSLLLILYYFVGSSIPSAVVLWVMRELPPEEAASIPEESSTIAFVADSSIAIHHPQRWATATSMQNQAAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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