Glyma05g25920 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g25920

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31975734
stop:	31976967
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1K320	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K320_SOYBN	SoyBase	E_val: 5.00E-45	ISS

Expression Patterns of Glyma05g25920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25920

Paralog	Evidence	Comments
Glyma08g08860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g129200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25920

Limit To All Plant Sequences

>Glyma05g25920.1   sequence type=CDS   gene model=Glyma05g25920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAAAAGAACAAGAGATCATCATGGTTCTCCAAGAGGCTGAAGAGAGAGTCGCAGAGGTGGAAATACCTGGGCGCTGCAATATTCAAGTGGAAGAGCCTTTCTTCTTTCCCTGTTTCCTTCTTCAACCACGTCGCTTTCAAGATTCTCTCTCTCTTTGAAGCCATTTTCCTCGTTCTCACTGCTTGCTTTTTCTACCTCATGTGTGGATGCCGCTTTTGA

Predicted protein sequences of Glyma05g25920

Limit To All Plant Sequences

>Glyma05g25920.1   sequence type=predicted peptide   gene model=Glyma05g25920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEKNKRSSWFSKRLKRESQRWKYLGAAIFKWKSLSSFPVSFFNHVAFKILSLFEAIFLVLTACFFYLMCGCRF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain