Glyma05g25900 - SoyBase

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Report for Sequence Feature Glyma05g25900

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31963085
stop:	31966662
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34450	AT	Annotation by Michelle Graham. TAIR10: HMG-box (high mobility group) DNA-binding family protein \| chr2:14527918-14529448 REVERSE LENGTH=151	SoyBase	E_val: 7.00E-50	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0381	KOG	HMG box-containing protein	JGI		ISS
PTHR13711	Panther	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	JGI		ISS
PTHR13711:SF70	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00505	PFAM	HMG (high mobility group) box	JGI		ISS
UniRef100_B9S139	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-binding protein MNB1B, putative n=1 Tax=Ricinus communis RepID=B9S139_RICCO	SoyBase	E_val: 1.00E-48	ISS
UniRef100_C6SVV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SVV0_SOYBN	SoyBase	E_val: 2.00E-103	ISS

Expression Patterns of Glyma05g25900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25900

Paralog	Evidence	Comments
Glyma08g08840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g129000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25900

Limit To All Plant Sequences

>Glyma05g25900.2   sequence type=CDS   gene model=Glyma05g25900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAAAGGCAAAAGGGTCTCACTCTGCTTCTTCTGCCTCTGCATCTTCTTCGTCCGACAAACTAGTGCTGAGGATTAAATCAAATGAGGGGACCAAGAGATCAGTGCGGCAAACTAATTCAAGAAAGAAACTTAAAGCAAAGCAAAAGAAGAACAAACAAAAGTTTGATGCTATGAAACCCAGGAAACCTCCTACAGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTACAATACTATGATATAGCAACAAAAAAACGTGAAGAATTTGATAGCGCAATGGCAGAATTTAACAAGAAAATGGAAAATGGCGAGTTTGACGAAACTGATGATGAATCAGAGTTTGATGAGTAA

Predicted protein sequences of Glyma05g25900

Limit To All Plant Sequences

>Glyma05g25900.2   sequence type=predicted peptide   gene model=Glyma05g25900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKKAKGSHSASSASASSSSDKLVLRIKSNEGTKRSVRQTNSRKKLKAKQKKNKQKFDAMKPRKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDSAMAEFNKKMENGEFDETDDESEFDE*

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