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Report for Sequence Feature Glyma05g25840

Feature Type:gene_model
Chromosome:Gm05
Start:31902565
stop:31903717
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g25840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78520AT Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein | chr1:29537976-29538656 REVERSE LENGTH=115 SoyBaseE_val: 8.00E-31ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR16631Panther GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED JGI ISS
PF07983PFAM X8 domain JGI ISS
UniRef100_B9S134UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9S134_RICCO SoyBaseE_val: 6.00E-30ISS
UniRef100_C6SZT3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZT3_SOYBN SoyBaseE_val: 3.00E-84ISS

Expression Patterns of Glyma05g25840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g25840 not represented in the dataset
Glyma05g25840 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g25840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g128300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g25840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g25840
>Glyma05g25840.1   sequence type=CDS   gene model=Glyma05g25840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAATCAACTGGGTCACTTGTCTTTCTCTCTATTTTCACTTTGCTCCTTTCTTGCAACTTAGGAGGGCACTTAAAGTTTGCTAATGGAATGCTAGACCAGGAAAGTTGGTGCGTAGCAAAACCTTCAACAATTGATGTTGCACTGAATGATAACATTCAATATGGTTGCATTGCCTTGGGTGATTGCAAAATGATCCAACCAGGTGGATCCTGCTTCTACCCAAACACTCTGTTAAACCATGCCTCTGTTGTCATGAATCAGTACTATGCAGCTAATGGTAGAAACACTTGGAACTGTTTCTTCTCTGGCTCTGGTCTCTTTGTTGTCAGTGACCCAAGTTACGCTAACTGCACCTATGCTTAG
Predicted protein sequences of Glyma05g25840
>Glyma05g25840.1   sequence type=predicted peptide   gene model=Glyma05g25840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKSTGSLVFLSIFTLLLSCNLGGHLKFANGMLDQESWCVAKPSTIDVALNDNIQYGCIALGDCKMIQPGGSCFYPNTLLNHASVVMNQYYAANGRNTWNCFFSGSGLFVVSDPSYANCTYA*






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