Glyma05g25800 - SoyBase

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Report for Sequence Feature Glyma05g25800

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31871751
stop:	31873928
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48870	AT	Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein \| chr5:19813407-19814362 FORWARD LENGTH=88	SoyBase	E_val: 6.00E-31	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005732	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1775	KOG	U6 snRNA-associated Sm-like protein	JGI		ISS
PTHR20971	Panther	U6 SNRNA-ASSOCIATED PROTEIN	JGI		ISS
PF01423	PFAM	LSM domain	JGI		ISS
UniRef100_I1K310	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K310_SOYBN	SoyBase	E_val: 2.00E-44	ISS
UniRef100_I3NML9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Hevea brasiliensis RepID=I3NML9_HEVBR	SoyBase	E_val: 1.00E-29	ISS

Expression Patterns of Glyma05g25800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25800

Paralog	Evidence	Comments
Glyma08g08750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g127900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g25800

Limit To All Plant Sequences

>Glyma05g25800.2   sequence type=transcript   gene model=Glyma05g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCACCACTAGGTCAAGCTTCTGTCTCAGTCACTGTTTCTCCGGCCTCGCTTCTTCTCTCAGATTCAGATACCAATTCGGTTTCTTCTGAACCAAACTTGTGCGTGGGTTTGAGAAATTCGGCCGTTAATTTTCCATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATATGAAATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTACCCGGTGGTTCTCCTGAGTCAGAATGAATAGGGCTACTTGGTACCAATATTAACTCTCCAATGTTGCTCTAGGCACGTAATTCCTATATTTTAACGAGGATTCTGAGGCCATTAGGTTTTTACTTCCTTAAGTTGGTTTTTATGATACACATGGTTGTGGTGTAATGCCTATTCAACTTTTATCATCATGTTGAACTGTGGATCGGCCAGGGTAACAAGTAATGCTACTGAGTGACAATTAGTTGTGCGCCTTTATATTCCTGTTCCTACTTCCGTTACTATCTGTTTTCACTTTCTGCATGAACTTATCGAGTCAAGTCTTAATTGAAAATTTTATCACCTTAACTCTTT

>Glyma05g25800.3   sequence type=transcript   gene model=Glyma05g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAATTGATTGAAATCAAACCTCAGCACCACTAGGTCAAGCTTCTGTCTCAGTCACTGTTTCTCCGGCCTCGCTTCTTCTCTCAGATTCAGATACCAATTCGGTTTCTTCTGAACCAAACTTGGTTTGAGAAATTCGGCCGTTAATTTTCCATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATACTTTCCCAGGGGGCTCCTTCTTTTTCTTTTTGGTTTAAGAAGACTGAAATATCTGGTGTAAATTCGTTGGAGGAACTTTGCAGCATTTCTGATTATCAACTTGATTATTTGAATTTGTACTTACAGAGGACTCTTAGTTATCTTGGCATGATTTGTACTAGCTTTTGCTTATGTGATAAGTATGTCCATATATGTATGAACATACATGGGTTTGTTATATTCATACAACAGTGAAATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTACCCGGTGGTTCTCCTGAGTCAGAATGAATAGGGCTACTTGGTACCAATATTAACTCTCCAATGTTGCTCTAGGCACGTAATTCCTATATTTTAACGAGGATTCTGAGGCCATTAGGTTTTTACTTCCTTAAGTTGGTTTTTATGATACACATGGTTGTGGTGTAATGCCTATTCAACTTTTATCATCATGTTGAACTGTGGATCGGCCAGGGTAACAAGTAATGCTACTGAGTGACAATTAGTTGTGCGCCTTTATATTCCTGTTCCTACTTCCGTTACTATCTGTTTTCACTTTCTGCATGAACTTATCGAGTCAAGTCTTAATTGAAAATTTTATCACCTTAACTCTTT

Coding sequences of Glyma05g25800

Limit To All Plant Sequences

>Glyma05g25800.1   sequence type=CDS   gene model=Glyma05g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATATGAAATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTACCCGGTGGTTCTCCTGAGTCAGAATGA

>Glyma05g25800.2   sequence type=CDS   gene model=Glyma05g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATATGAAATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTACCCGGTGGTTCTCCTGAGTCAGAATGA

>Glyma05g25800.3   sequence type=CDS   gene model=Glyma05g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACAATCCATCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCAAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGCCAACATGGTCCTTGAAGATGTCACTGAATACTTTCCCAGGGGGCTCCTTCTTTTTCTTTTTGGTTTAAGAAGACTGAAATATCTGGTGTAA

Predicted protein sequences of Glyma05g25800

Limit To All Plant Sequences

>Glyma05g25800.1   sequence type=predicted peptide   gene model=Glyma05g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE*

>Glyma05g25800.2   sequence type=predicted peptide   gene model=Glyma05g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE*

>Glyma05g25800.3   sequence type=predicted peptide   gene model=Glyma05g25800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYFPRGLLLFLFGLRRLKYLV*

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