Glyma05g25790 - SoyBase

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Report for Sequence Feature Glyma05g25790

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31857536
stop:	31870400
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18240	AT	Annotation by Michelle Graham. TAIR10: starch synthase 4 \| chr4:10082221-10087044 FORWARD LENGTH=1040	SoyBase	E_val: 0	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009250	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucan biosynthetic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009011	GO-mf	Annotation by Michelle Graham. GO Molecular Function: starch synthase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG1003	KOG	Actin filament-coating protein tropomyosin	JGI		ISS
PTHR12526	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR12526:SF17	Panther	STARCH SYNTHASE	JGI		ISS
PF00534	PFAM	Glycosyl transferases group 1	JGI		ISS
PF08323	PFAM	Starch synthase catalytic domain	JGI		ISS
UniRef100_Q9XGC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Starch synthase, isoform V n=1 Tax=Vigna unguiculata RepID=Q9XGC1_VIGUN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A867	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A867 related cluster n=1 Tax=unknown RepID=UPI000233A867	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g25790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25790

Paralog	Evidence	Comments
Glyma08g08740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g127800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25790

Limit To All Plant Sequences

>Glyma05g25790.1   sequence type=CDS   gene model=Glyma05g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAAGCTGAGAACGTGCTTCGTGTGCTGGAACCTGAGCGGTTTCAACTGCGTTAACCACCACAACGCCAATAATAATTGGGTAGTGCGAGTTTCGTTTCCAGCTTCTTGCAAAATGCGACACCGCGCCACTTTCAGTTCACAGCATAAGAGACAACAGATCAAGCCTTCCGCAGAGGGAGGTCTCCGTCAAAATCAAGATGAAGAAGACGACACCGAGGTTTCGTTGAACAACGATGATTCTGTGGAGAATTTGAATGATGCCACCGCGCCTTTGGCCATAAACATAAATGGAGCAGAGCAGGCTGAACAGTTGTCTGGTAGGCAACTTGAGGATTTGCTGGTCATGATAAAAAATGCAGAGAAAAACATTCTTCTTTTAAATGAGGCTAGGATTCGTGCATGTGAAGATCTTGAAAAGATTCTTGTAGAAAAGGAAGCATTGCAAGGAGAGATTAATGTCTTGGAGACAAGGTTGGCTGAGACTGATGCACGGATTACAGTTGCCAACCAGGAAAAGATACATGTGGAATTCTTGGAGGGGCAGCTAGAGAAACTGCGTAATGAGTTGGCCCAAAAGGGAAGTACTGAAAGAAAATATGCTGAATTGCATGACCTTCAAAATGATGATTTGAGTGATGCAAACCCTCTAAGTCATAATGTTAGCATTCATTCCCTTACTGAGGAGCTTAATTCATTAAGAGCAGAAAATGCCTCTTTGAAGAATGCCATAGAATCATTTAAAACCCAGCTTAGTGATGTCAAGAATAATGATGAACGTTTGGTTGCATTGGAAAAGGAACGGTCCTCTTTGGAATCAGCCCTAAAAGACTTGGAATCGAAACTATCAATCTCTCAGGATGGTGTATCACAAATTTCTACGCTTACAGTTGAATGCAAGGATCTGTGGGATAAGGTTGAAAATTTGCAATCATTGCTAGATAAAGCAACCAAACAAGCTGATCAAGCTGTTCTTGTGCTGCAACAAAACCAAGATCTTCGAAGGAAGGTGGATAAATTGGAAGCATCTCTTGAAGAAGCTAATATCTATAAGCTATCATCTGACAAATTGCAAAAATATAATGAACTAATGCAACAAAAGATAAAACTATTGGAGGATCGTCTTCAAAAATCAGATGAAGAGATAAATTCTTATGTTTGGCTATATCAACAGTCAGTGAAGGAATTTCAAGATACACTTGATACTCTGAAAAAAGAAAGCAAGAAAAGGAATTTGGAAGAACCGGTGGAAGATATGCCGTGGGAATTTTGGAGTCAACTGTTACTTCTTATTGATGGTTGGACACTAGAAAATAAAATATCAGTAGATGATGCAAGTCTTTTGCGAGAAAAGGTGTGGAAGAGAGACAGGCGTATTAGTGATACCTATATAGCTTGCAAAAAACAAACTGAACAGGAGGCTATTTCTGCATTTCTTGGGCTTTTATCATCTGCGACAAGTCCAGGATTGCACGTGATTCATATTGCAGCAGAGATGGCACCAGTAGCTAAGGTTGGTGGTTTGGGGGATGTTGTCAGTGGTCTAGGTAAAGCACTGCAAAAGAAAGGACACCTTGTTGAAATTGTGCTTCCCAAATATGATTGTATGCAATATGACCGTGTCTGTGACTTACGGGCTTTGGATGTGCTGATAGATTCATACTTTGATCGTCAATTATACAAAAATAAAATCTGGGTTGGCACTATAGAAGGCCTTCCTGTTTATTTCATTGAGCCCCATCATCCTGATAAGTTCTTCTGGAGAGGAAAATTTTATGGCGAGCATGATGATTTCAGACGATTTTCATTTTTTAGCCGTGCAGCTCTTGAGTTTCTTCTTCAAGCTGGCAAGAAGCCAGACATCATTCATTGCCATGATTGGCAGACAGCATTCATTGCTCCTCTGTACTGGGATATATATGCCCCAAAAGGATTAAATTCAGCTAGGATTTGCTTTACATGCCACAACTTTGAGTATCAAGGAACTGCGGCAGCTTCAGAGTTAGAATCATGTGGTCTTGAAAGCCACCATCTAAACAGACCAGACAGAATGCAGGACAACTCAGCGCATGATAGAGTTAATTCTGTCAAGGGTGGAATTGTTTTCTCAAACATTGTGACAACAGTTTCACCTACTTACGCCCAAGAAGTGAGAACTTCAGAGGGAGGGCATGGTCTCCATTCAACACTCTCTGCCCACTCCAAAAAGTTCATTGGTATTCTTAATGGTATTGATACTGATGCATGGAATCCTGCCACCGATGCATTTCTTCCAGTCCAGTACAATGCAACTGATCTTCAAGGGAAAGCAGAGAATAAGCAAGCCTTGAGAAGGAACCTAGGTCTTTCATCTACAGATGTTAGGAGGCCATTGGTTGGCTGTATAACAAGACTGGTTCCACAAAAAGGTGTTCATCTTATTAGACATGCAATATATCTAACATTGGAGTTGGGAGGACAATTTGTTCTACTTGGTTCAAGTCCAGTGCCACACATTCAGAATGAATTTGAGGGCATTGCCAACCACTTTCAGAATCATGATCACATAAGGTTGATATTGAAGTATGATGAATCTCTCTCCCATGTCATTTATGCTGCGTCTGACATGTTCATCATTCCATCAATCTTTGAACCTTGTGGCCTAACACAGATGATATCAATGAGATATGGTGCCATACCTATTGTCCGAAAAACTGGTGGCCTAAATGACAGTGTTTTTGATGTTGATGATGATACAATACCTTCACAGTTTCGAAATGGATTTACATTCGTGAATGCCGATGAACAGGGATTAAACGGGGCTCTGGTACGAGCATTTAATCTCTTCAACAACAATCCTGAGAGTTGGAAGCAACTTGTTCAGAAGGACATGAACATAGATTTCAGCTGGGAAACATCATCAGCACAATATGAGGAGCTCTACTTAAAGTCTGTGGCTAGAGCAAAGGCAGCAAAACTTGCTTAA

Predicted protein sequences of Glyma05g25790

Limit To All Plant Sequences

>Glyma05g25790.1   sequence type=predicted peptide   gene model=Glyma05g25790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKLRTCFVCWNLSGFNCVNHHNANNNWVVRVSFPASCKMRHRATFSSQHKRQQIKPSAEGGLRQNQDEEDDTEVSLNNDDSVENLNDATAPLAININGAEQAEQLSGRQLEDLLVMIKNAEKNILLLNEARIRACEDLEKILVEKEALQGEINVLETRLAETDARITVANQEKIHVEFLEGQLEKLRNELAQKGSTERKYAELHDLQNDDLSDANPLSHNVSIHSLTEELNSLRAENASLKNAIESFKTQLSDVKNNDERLVALEKERSSLESALKDLESKLSISQDGVSQISTLTVECKDLWDKVENLQSLLDKATKQADQAVLVLQQNQDLRRKVDKLEASLEEANIYKLSSDKLQKYNELMQQKIKLLEDRLQKSDEEINSYVWLYQQSVKEFQDTLDTLKKESKKRNLEEPVEDMPWEFWSQLLLLIDGWTLENKISVDDASLLREKVWKRDRRISDTYIACKKQTEQEAISAFLGLLSSATSPGLHVIHIAAEMAPVAKVGGLGDVVSGLGKALQKKGHLVEIVLPKYDCMQYDRVCDLRALDVLIDSYFDRQLYKNKIWVGTIEGLPVYFIEPHHPDKFFWRGKFYGEHDDFRRFSFFSRAALEFLLQAGKKPDIIHCHDWQTAFIAPLYWDIYAPKGLNSARICFTCHNFEYQGTAAASELESCGLESHHLNRPDRMQDNSAHDRVNSVKGGIVFSNIVTTVSPTYAQEVRTSEGGHGLHSTLSAHSKKFIGILNGIDTDAWNPATDAFLPVQYNATDLQGKAENKQALRRNLGLSSTDVRRPLVGCITRLVPQKGVHLIRHAIYLTLELGGQFVLLGSSPVPHIQNEFEGIANHFQNHDHIRLILKYDESLSHVIYAASDMFIIPSIFEPCGLTQMISMRYGAIPIVRKTGGLNDSVFDVDDDTIPSQFRNGFTFVNADEQGLNGALVRAFNLFNNNPESWKQLVQKDMNIDFSWETSSAQYEELYLKSVARAKAAKLA*

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