Glyma05g25770 - SoyBase

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Report for Sequence Feature Glyma05g25770

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31804493
stop:	31806949
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18170	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 28 \| chr4:10061508-10062691 FORWARD LENGTH=318	SoyBase	E_val: 1.00E-72	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B9S164	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S164_RICCO	SoyBase	E_val: 5.00E-93	ISS
UniRef100_I1K304	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K304_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g25770

Locus	Gene Symbol	Protein Name
	WRKY89	WRKY Transcription Factor

Expression Patterns of Glyma05g25770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25770

Paralog	Evidence	Comments
Glyma08g08720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g127600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25770

Limit To All Plant Sequences

>Glyma05g25770.1   sequence type=CDS   gene model=Glyma05g25770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTTGAACCTAAGGAACTTTACTACCAGGACCTTGTCCTAGACCCCAATATTAATAATCAACATCAGGGCACAGAAGCAGGATCTAATAATACTATGTACGAAAAGCACTTTTCCTCTACCATAATTCCTTCAGATTCAACAGCATATGATTCATCACAAGCCTTTGATCCCTCTTACATGAGTTTAACTGAGTGTTTGCAAGGGGGCATGGACTACAATTCACTTGCAACTTCTTTTGGCCTTTCTCCTTCCTCGTCTGAGGTTTTTTCTTCTGTTGATGGGAACCAAAAGCCAGCAGTAGAAGGAGGAGATGGAGGTGGTGGTGGTGGTGGCAGTGAAACCCTTGCGACCCTTAACTCTTCAGTCTCTTCTTCATCTTCTGAAGCCGGGGCTGAGGAAGATTCTGGAAAGAGCAAAAAAGAAAGGCAGGTGAAAACAGAAGAAGGAGAAGAAAACTCTAAGAAAGGGAACAAGGAGAAGAAGAAAGGAGAGAAGAAGCAAAAGGAGCCAAGGTTTGCCTTCATGACCAAGAGTGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTCAAGAATAGCCCTTACCCAAGGAGCTACTACAGGTGCACAACACAGAAGTGCACAGTGAAGAAACGCGTGGAGAGGTCATTTCAGGACCCAACCACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCGGTCCCCACTTCTCTCAGAGGGAATGCGGCTGCGGGAATGTTCACACCTTCTTCTTTGCTAGCCACACCAACTCCACTTGCAGCCGGGTCAAACTTCCCCCAAGATCTCTTCCTTCACATGCATCACCCTCACCACCAATATCACATTCACAACAACCTCTTCACCACACAGTCGACTACAAACACTACTACTGCTACTACTACCACTCCATCCTCGTTTTACTCTTCCTATAACAACATTAACAACTCTCTTCTTCACAACCAGTTTCTTCCTCCGGAATACGGCCTCCTTCAAGACATAGTCCCTTCCATGTTCCACAACAAGACCGGCCACCATCACCAGAATTAA

Predicted protein sequences of Glyma05g25770

Limit To All Plant Sequences

>Glyma05g25770.1   sequence type=predicted peptide   gene model=Glyma05g25770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVEPKELYYQDLVLDPNINNQHQGTEAGSNNTMYEKHFSSTIIPSDSTAYDSSQAFDPSYMSLTECLQGGMDYNSLATSFGLSPSSSEVFSSVDGNQKPAVEGGDGGGGGGGSETLATLNSSVSSSSSEAGAEEDSGKSKKERQVKTEEGEENSKKGNKEKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSSLLATPTPLAAGSNFPQDLFLHMHHPHHQYHIHNNLFTTQSTTNTTTATTTTPSSFYSSYNNINNSLLHNQFLPPEYGLLQDIVPSMFHNKTGHHHQN*

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