Glyma05g25750 - SoyBase

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Report for Sequence Feature Glyma05g25750

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31772343
stop:	31780593
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18160	AT	Annotation by Michelle Graham. TAIR10: Ca2+ activated outward rectifying K+ channel 6 \| chr4:10055696-10057546 FORWARD LENGTH=436	SoyBase	E_val: 1.00E-166	ISS
GO:0071805	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005267	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium channel activity	SoyBase	N/A	ISS
GO:0015271	GO-mf	Annotation by Michelle Graham. GO Molecular Function: outward rectifier potassium channel activity	SoyBase	N/A	ISS
KOG1418	KOG	Tandem pore domain K+ channel	JGI		ISS
PTHR11003	Panther	POTASSIUM CHANNEL, SUBFAMILY K	JGI		ISS
PTHR11003:SF5	Panther	POTASSIUM CHANNEL PROTEIN	JGI		ISS
PF07885	PFAM	Ion channel	JGI		ISS
UniRef100_B9S165	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-activated outward-rectifying potassium channel, putative n=1 Tax=Ricinus communis RepID=B9S165_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A865	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A865 related cluster n=1 Tax=unknown RepID=UPI000233A865	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g25750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25750

Paralog	Evidence	Comments
Glyma08g08710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g127500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g25750

Limit To All Plant Sequences

>Glyma05g25750.3   sequence type=transcript   gene model=Glyma05g25750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTACCTCCGAATGAGTGGTACCCAAATCATAGTTAACATTGTCACCCCCCACGTCAACACCGTCCTCTTTCCTGTACCCATGTACTGCAAATCTCTCTCTCTTCTCTATCTGTTTTAACTTCCACCCCCACTTTGCTCTCTTAACACAAACCACTCTCTTCTGCATTTCCACAAACAATTTCCCTCCATTCCGAAACCGACCCATATCACCAAAACTGTTCTATCTTCCAAAGCCACCGCCTTTGCTTCCGTTAAATCTGTGTTTGGTTACCCTTATGGAAAAGGAGCCTCTGCTCCCATACTTCAGCCCCAGAAAGAAGCCTCAACTATGTCCCTTGCCAGAGCACGACGAAATCGTTCTTCCAATGACCCCTTCAGAATTCAAGGACCGTCTCATCTTTGGTCCTTCTCCTTCCTCTGCTTCCCCAAGGGACCCTTCACCTCTTGCTGATGCCTTAACACTTTCTCACAATTCCCCAAAATGTTCCTCTTCTAACTCACAGGACTATGCATCATCACCACTATTTGATTCCCAACAAAAACAACAACAACTCAACTCTTGGCTCCTTGACCCCAATTACGAGTCGTGGCGGAAAACGAACCTTCATCGGTCGAAAACCGCGCCGGCCATGGCCGTGATCAGCGATTTCAATCCCCACTCCACCGTGCAAAGACCCAAATTTGCCAGCCAGAGTATTGTGTGCCAGGGTGTTATTCTTCTTGCTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTACAGCTACTGAGACTCATCCTATAGTTGATGCATTGTATTTTTGTATAGTGACAATGTGCACAATAGGGTACGGTGATATCACTCCCAATAGTACAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGACGGCAGTGAAGGGAAGGAGGGGTGAGAAGGATGGGAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCGCTGGCGTTGGGGGTTGTGGTGATTTGTATTGGGGTAGGTGTGGGGGTTATGCATTTTGTGGAGAAGCTTGGATGGTTGGATTCGTTTTATCTTTTCGGTTATGTCTGTTACGACGGTTGGGTATGGAGACCACGCGTTCAAGACCATGCACGGTCGGATCTTTGCTGCGATTTGGTTGCTTGTGTCGACGCTTGCTGTGGCCCGGGCGTTCCTCTATTTGGCTGAGGCGAGAGTGGATAAGCGGCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCAGCAGACATAGACAATAATGGCTTTGTGAGTAAATCGGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCTGAGAAGGACATCATGCAGGTTAGTGAGAAGTTTGATAGACTAGATGCTGGCAACTGCGGAAAAATAACGCTTGCTGATCTTATGGGGAATCATAATTGATGAGTTCAGTGTTGCCAATTTGAGAAGGGAGTGTCAGATTCTCAAGTTGATGGGAACTTTCTTCTTCTGGGGATTGGGAGGGATATCAGGTTGTCAAAGACGCAAGCTGGTGATTTTCCCCTTACCCTCTTGTCATGATCATTAACTCATGACATAAAGTTGATGCTGCTGAATTGCTGGGTTCTTGTGCCTGAATTTCACAAATTATTTGGAGGATGGTAAGGTGCAAGACACCTTGCTGAAATTCGGGTATGACCAATCACATATTGTCAGATTGATGAGATGGCTTGTGATAATGGAAGGGATAATTTTGATTGGTTAAATAATTAATCTGTACATATTCTTTTTGGAAAATGAATTGCATTGATTCTTTAGCATATTATTTCTAGTGAGCTTCCCTGGGTTAGCCGTATTACACAATCAATGTGTTCGTCTTGGTGACTTTCGTGTATTGTTTTTGCCAAGATGATTCGATTAGCTCAGGCGTAATTAAATATGTTTCTTATTTAAGTTCTTTCATAATTCAATTCTTTGTTGAGTAAAGATACTGCACTTGCTTATATTCACGTATATGCCATTGGACAATACTTCCAGTTGTAGACTTCTTGTTTTTAGATGTTTCAGACTGTGCAGTGTGAATTGCACATCCTTAACA

Coding sequences of Glyma05g25750

Limit To All Plant Sequences

>Glyma05g25750.2   sequence type=CDS   gene model=Glyma05g25750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAGCCTCTGCTCCCATACTTCAGCCCCAGAAAGAAGCCTCAACTATGTCCCTTGCCAGAGCACGACGAAATCGTTCTTCCAATGACCCCTTCAGAATTCAAGGACCGTCTCATCTTTGGTCCTTCTCCTTCCTCTGCTTCCCCAAGGGACCCTTCACCTCTTGCTGATGCCTTAACACTTTCTCACAATTCCCCAAAATGTTCCTCTTCTAACTCACAGGACTATGCATCATCACCACTATTTGATTCCCAACAAAAACAACAACAACTCAACTCTTGGCTCCTTGACCCCAATTACGAGTCGTGGCGGAAAACGAACCTTCATCGGTCGAAAACCGCGCCGGCCATGGCCGTGATCAGCGATTTCAATCCCCACTCCACCGTGCAAAGACCCAAATTTGCCAGCCAGAGTATTGTGTGCCAGGGTGTTATTCTTCTTGCTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTACAGCTACTGAGACTCATCCTATAGTTGATGCATTGTATTTTTGTATAGTGACAATGTGCACAATAGGGTACGGTGATATCACTCCCAATAGTACAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGACGGCAGTGAAGGGAAGGAGGGGTGAGAAGGATGGGAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCGCTGGCGTTGGGGGTTGTGGTGATTTGTATTGGGGTAGGTGTGGGGGTTATGCATTTTGTGGAGAAGCTTGGATGGTTGGATTCGTTTTATCTTTTCGACCACGCGTTCAAGACCATGCACGGTCGGATCTTTGCTGCGATTTGGTTGCTTGTGTCGACGCTTGCTGTGGCCCGGGCGTTCCTCTATTTGGCTGAGGCGAGAGTGGATAAGCGGCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCAGCAGACATAGACAATAATGGCTTTGTGAGTAAATCGGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCTGAGAAGGACATCATGCAGGTTAGTGAGAAGTTTGATAGACTAGATGCTGGCAACTGCGGAAAAATAACGCTTGCTGATCTTATGGGGAATCATAATTGA

>Glyma05g25750.3   sequence type=CDS   gene model=Glyma05g25750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAGCCTCTGCTCCCATACTTCAGCCCCAGAAAGAAGCCTCAACTATGTCCCTTGCCAGAGCACGACGAAATCGTTCTTCCAATGACCCCTTCAGAATTCAAGGACCGTCTCATCTTTGGTCCTTCTCCTTCCTCTGCTTCCCCAAGGGACCCTTCACCTCTTGCTGATGCCTTAACACTTTCTCACAATTCCCCAAAATGTTCCTCTTCTAACTCACAGGACTATGCATCATCACCACTATTTGATTCCCAACAAAAACAACAACAACTCAACTCTTGGCTCCTTGACCCCAATTACGAGTCGTGGCGGAAAACGAACCTTCATCGGTCGAAAACCGCGCCGGCCATGGCCGTGATCAGCGATTTCAATCCCCACTCCACCGTGCAAAGACCCAAATTTGCCAGCCAGAGTATTGTGTGCCAGGGTGTTATTCTTCTTGCTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTACAGCTACTGAGACTCATCCTATAGTTGATGCATTGTATTTTTGTATAGTGACAATGTGCACAATAGGGTACGGTGATATCACTCCCAATAGTACAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGACGGCAGTGAAGGGAAGGAGGGGTGAGAAGGATGGGAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCGCTGGCGTTGGGGGTTGTGGTGATTTGTATTGGGGTAGGTGTGGGGGTTATGCATTTTGTGGAGAAGCTTGGATGGTTGGATTCGTTTTATCTTTTCGGTTATGTCTGTTACGACGGTTGGGTATGGAGACCACGCGTTCAAGACCATGCACGGTCGGATCTTTGCTGCGATTTGGTTGCTTGTGTCGACGCTTGCTGTGGCCCGGGCGTTCCTCTATTTGGCTGA

Predicted protein sequences of Glyma05g25750

Limit To All Plant Sequences

>Glyma05g25750.2   sequence type=predicted peptide   gene model=Glyma05g25750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEPLLPYFSPRKKPQLCPLPEHDEIVLPMTPSEFKDRLIFGPSPSSASPRDPSPLADALTLSHNSPKCSSSNSQDYASSPLFDSQQKQQQLNSWLLDPNYESWRKTNLHRSKTAPAMAVISDFNPHSTVQRPKFASQSIVCQGVILLALYLALGVVIYWFNRHNFTATETHPIVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICIGVGVGVMHFVEKLGWLDSFYLFDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMQVSEKFDRLDAGNCGKITLADLMGNHN*

>Glyma05g25750.3   sequence type=predicted peptide   gene model=Glyma05g25750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEPLLPYFSPRKKPQLCPLPEHDEIVLPMTPSEFKDRLIFGPSPSSASPRDPSPLADALTLSHNSPKCSSSNSQDYASSPLFDSQQKQQQLNSWLLDPNYESWRKTNLHRSKTAPAMAVISDFNPHSTVQRPKFASQSIVCQGVILLALYLALGVVIYWFNRHNFTATETHPIVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICIGVGVGVMHFVEKLGWLDSFYLFGYVCYDGWVWRPRVQDHARSDLCCDLVACVDACCGPGVPLFG*

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