Glyma05g25740 - SoyBase

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Report for Sequence Feature Glyma05g25740

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31761099
stop:	31764722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29850	AT	Annotation by Michelle Graham. TAIR10: double-stranded DNA-binding family protein \| chr1:10447866-10449630 FORWARD LENGTH=129	SoyBase	E_val: 2.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003690	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding	SoyBase	N/A	ISS
KOG3431	KOG	Apoptosis-related protein/predicted DNA-binding protein	JGI		ISS
PTHR10840	Panther	PROGRAMMED CELL DEATH 5	JGI		ISS
PF01984	PFAM	Double-stranded DNA-binding domain	JGI		ISS
UniRef100_B4UW59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Double-stranded DNA-binding protein n=1 Tax=Arachis hypogaea RepID=B4UW59_ARAHY	SoyBase	E_val: 2.00E-76	ISS
UniRef100_I1K301	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K301_SOYBN	SoyBase	E_val: 5.00E-84	ISS

Expression Patterns of Glyma05g25740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25740

Paralog	Evidence	Comments
Glyma08g08700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g127400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g25740

Limit To All Plant Sequences

>Glyma05g25740.2   sequence type=transcript   gene model=Glyma05g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGGCGTGGTTAGAGAATCAGAGATCATTCGTTTTACTTCTTTTTTTTTTTCACCCTAGAGAGTGATAGTTTGCTTGTAATTATGTTTGGATTTGCTGATTTACAGGGAAATCAACAGAACTCTGAACAGGAGAAAGCTCAGGATGATGCAAAGAGGGAGGCTGAGGAACGGAGACAGATGATGCTTAGTCAGATATTGTCTGCTGAAGCGCGAGAAAGGCTTGCTCGAATAGCTTTGGTGAAACCTGAGAAAGCAAGGGGTGTTGAAGATTTTATATTGAGAGCTGCTCAGATGGGTCAGATAACTGAAAAGGTTTCTGAGGAAAGGCTCATATCACTGCTGGAACAGATAAACAACCAAACAACAAGGCAGACAAAAGTTACAATACAGAGGCGTCGAAGTGTTCTCGAGGATGATGATTAACTTTCACTGCCTCTTTAAACGGCGTGCCTTAAGTATTTGATTTCATGCTTTAGTATGTGTATTTTACTGTCAAATCAAAGTATTGCATAAGTGGATTGTGAAATATCTGTTTCAGCTTGAAATTTTGGCTGTCTTGCCAGGCCTCCTAATGAATTAAACTACACAATACTTGAAAGCTTATTATTTTGACACATTCATTTGTAAAACAATTTCTAGCATGTGGATGGCATTTCAAAGAATACATGTTGTAATTTTCCACTAAAA

Coding sequences of Glyma05g25740

Limit To All Plant Sequences

>Glyma05g25740.1   sequence type=CDS   gene model=Glyma05g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATCCTGAGTTGGAAGCAATCAGACAGAGAAGGTTGCAGGAGCTTATGGCTGGCCATGGTGGCGTGGGAAATCAACAGAACTCTGAACAGGAGAAAGCTCAGGATGATGCAAAGAGGGAGGCTGAGGAACGGAGACAGATGATGCTTAGTCAGATATTGTCTGCTGAAGCGCGAGAAAGGCTTGCTCGAATAGCTTTGGTGAAACCTGAGAAAGCAAGGGGTGTTGAAGATTTTATATTGAGAGCTGCTCAGATGGGTCAGATAACTGAAAAGGTTTCTGAGGAAAGGCTCATATCACTGCTGGAACAGATAAACAACCAAACAACAAGGCAGACAAAAGTTACAATACAGAGGCGTCGAAGTGTTCTCGAGGATGATGATTAA

>Glyma05g25740.2   sequence type=CDS   gene model=Glyma05g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGATTTGCTGATTTACAGGGAAATCAACAGAACTCTGAACAGGAGAAAGCTCAGGATGATGCAAAGAGGGAGGCTGAGGAACGGAGACAGATGATGCTTAGTCAGATATTGTCTGCTGAAGCGCGAGAAAGGCTTGCTCGAATAGCTTTGGTGAAACCTGAGAAAGCAAGGGGTGTTGAAGATTTTATATTGAGAGCTGCTCAGATGGGTCAGATAACTGAAAAGGTTTCTGAGGAAAGGCTCATATCACTGCTGGAACAGATAAACAACCAAACAACAAGGCAGACAAAAGTTACAATACAGAGGCGTCGAAGTGTTCTCGAGGATGATGATTAA

Predicted protein sequences of Glyma05g25740

Limit To All Plant Sequences

>Glyma05g25740.1   sequence type=predicted peptide   gene model=Glyma05g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPELEAIRQRRLQELMAGHGGVGNQQNSEQEKAQDDAKREAEERRQMMLSQILSAEARERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQTKVTIQRRRSVLEDDD*

>Glyma05g25740.2   sequence type=predicted peptide   gene model=Glyma05g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGFADLQGNQQNSEQEKAQDDAKREAEERRQMMLSQILSAEARERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQTKVTIQRRRSVLEDDD*

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