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Report for Sequence Feature Glyma05g25730

Feature Type:gene_model
Chromosome:Gm05
Start:31752490
stop:31756752
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g25730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64520AT Annotation by Michelle Graham. TAIR10: regulatory particle non-ATPase 12A | chr1:23956459-23958120 FORWARD LENGTH=267 SoyBaseE_val: 9.00E-155ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009647GO-bp Annotation by Michelle Graham. GO Biological Process: skotomorphogenesis SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0031540GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin biosynthetic process SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048528GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic root development SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0051604GO-bp Annotation by Michelle Graham. GO Biological Process: protein maturation SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005838GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle SoyBaseN/AISS
GO:0008541GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
KOG3151 KOG 26S proteasome regulatory complex, subunit RPN12/PSMD8 JGI ISS
PTHR12387Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 JGI ISS
PF03399PFAM SAC3/GANP/Nin1/mts3/eIF-3 p25 family JGI ISS
UniRef100_B7FL82UniRef Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=B7FL82_MEDTR SoyBaseE_val: 6.00E-172ISS
UniRef100_I1K2Z9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2Z9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g25730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25730
ParalogEvidenceComments
Glyma08g08690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g127300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g25730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g25730
>Glyma05g25730.2   sequence type=transcript   gene model=Glyma05g25730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATAATTGTTTAGGAACGTGAAAGCATAGCACCGTTCATTTCATCATCGCTGTGGTTTTTCTTTTTCTCTGTTGAGGTTGTCATTGGGAGCACTCAACCTAAACTATTCAAGTTGTGAAAGCACATCACAAGAAAATTCGCAAGCGATGGATCCGAAGCTAAAAGAGGTTTCTCAGCTCTTCGATCGCTTTAAGGCTTCGTTTATCAGGAACGACTTTGATACCTGTTCCAATCTCCTTTCTCAGCTAAAGGTGTTACTTACAGGTTTCAGAAGCCTTCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAAGGGATATATACGAGCATGCTGTTGTCCTTAGTGTGAAAAATGAGGATCAAGATGCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTGGAATTGCTTTCATCTGCTGCTCTTGAGAATCCTTGCATTAAGCATGCTGTGGAGTTGGAACAATCTTTTATGGAAGGGGCTTACAATCGTGTCTTGAGTGCACGACAGACAGTGCCACATGATACATACGTTTATTTTATGGATCTTTTGGCAAAGACTGTCAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCTAAGCAAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAAAAGAATCTGCACCTTGCAAAGAAATACCCTCTCTGCAGCTCATCAACCAGACGCTTAGTTATGCTAGGGAGTTGGAGAGGATTGTCTGAGAAGAAATGCAATGGCGGCTTCTGTTCCCAAAATTTCTAGGTGTCTGGATAATAGTTGCTAATACTGTCTTTTGAAATTGTTCATTTCTGATTCAATGTGAAACTATAAAATTGTTCACCTCTGTATTTTGATCATTTAGGTGGCAGTATGGTTACTTTTTTTTTTTAACTTGTGCTCTGGGTTTTCCACTTTTTTATGTTGAGGATTATATGATTCATGAAGCTGTAGTCTAAATTTCAAACCCATAGAAAGGTTGGTTGATATCAGTGTTGCCAAATAGCGGCTATCATGCTATAGCATAGTGGTTTTTAGGGAAATTGCGATAGCGTCGTGTTGTGGACTCTGTGAAAATTGCAATCGCGGGCGCCTTTGTGTCGTGAAATCTCATTGTGTCGCAGCTGTTGTGTTGTTG
Coding sequences of Glyma05g25730
>Glyma05g25730.1   sequence type=CDS   gene model=Glyma05g25730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGAAGCTAAAAGAGGTTTCTCAGCTCTTCGATCGCTTTAAGGCTTCGTTTATCAGGAACGACTTTGATACCTGTTCCAATCTCCTTTCTCAGCTAAAGGTGTTACTTACAGGTTTCAGAAGCCTTCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAAGTAACATTCTTCCTCCAATCAGGGATATATACGAGCATGCTGTTGTCCTTAGTGTGAAAAATGAGGATCAAGATGCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTGGAATTGCTTTCATCTGCTGCTCTTGAGAATCCTTGCATTAAGCATGCTGTGGAGTTGGAACAATCTTTTATGGAAGGGGCTTACAATCGTGTCTTGAGTGCACGACAGACAGTGCCACATGATACATACGTTTATTTTATGGATCTTTTGGCAAAGACTGTCAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCTAAGCAAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAAAAGAATCTGCACCTTGCAAAGAAATACCCTCTCTGCAGCTCATCAACCAGACGCTTAGTTATGCTAGGGAGTTGGAGAGGATTGTCTGA

>Glyma05g25730.2   sequence type=CDS   gene model=Glyma05g25730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGAAGCTAAAAGAGGTTTCTCAGCTCTTCGATCGCTTTAAGGCTTCGTTTATCAGGAACGACTTTGATACCTGTTCCAATCTCCTTTCTCAGCTAAAGGTGTTACTTACAGGTTTCAGAAGCCTTCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAAGGGATATATACGAGCATGCTGTTGTCCTTAGTGTGAAAAATGAGGATCAAGATGCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTGGAATTGCTTTCATCTGCTGCTCTTGAGAATCCTTGCATTAAGCATGCTGTGGAGTTGGAACAATCTTTTATGGAAGGGGCTTACAATCGTGTCTTGAGTGCACGACAGACAGTGCCACATGATACATACGTTTATTTTATGGATCTTTTGGCAAAGACTGTCAGAGATGAAATAGCTGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCTAAGCAAATGTTGCTGTTCTCCTCTGACCAGGAACTCCTTGAATATATTAAAGAGGAGCATCCTGAGTGGGAGATTAAGAATGGTAGTGTCTTTTTCCAAAAGGCAAAAGAATCTGCACCTTGCAAAGAAATACCCTCTCTGCAGCTCATCAACCAGACGCTTAGTTATGCTAGGGAGTTGGAGAGGATTGTCTGA
Predicted protein sequences of Glyma05g25730
>Glyma05g25730.1   sequence type=predicted peptide   gene model=Glyma05g25730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPKLKEVSQLFDRFKASFIRNDFDTCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTIASNILPPIRDIYEHAVVLSVKNEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAKQMLLFSSDQELLEYIKEEHPEWEIKNGSVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV*

>Glyma05g25730.2   sequence type=predicted peptide   gene model=Glyma05g25730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPKLKEVSQLFDRFKASFIRNDFDTCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTIARDIYEHAVVLSVKNEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAKQMLLFSSDQELLEYIKEEHPEWEIKNGSVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV*






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