Glyma05g25720 - SoyBase

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Report for Sequence Feature Glyma05g25720

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31745143
stop:	31748959
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29790	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:10430025-10431161 FORWARD LENGTH=378	SoyBase	E_val: 1.00E-177	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF434	Panther		JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_I1K2Z8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2Z8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q336N1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=3 Tax=Oryza sativa Japonica Group RepID=Q336N1_ORYSJ	SoyBase	E_val: 4.00E-110	ISS

Expression Patterns of Glyma05g25720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25720

Paralog	Evidence	Comments
Glyma08g08680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g127200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25720

Limit To All Plant Sequences

>Glyma05g25720.2   sequence type=CDS   gene model=Glyma05g25720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGATCAATCCCCTCAGAGTGCACACTAGACTACATACACTATGTTACTTCACTGACTCCCAATGGTCAACCCCCCAAACCCCACTTCTGAATCTTAAAACCAGCAATTCTATTCTAGCTCCCCATTTCCAAATGGGTTTCACCTTCAGCACCATGACCCTCAACCTGGTCCTCCTAATGGCCATGGTTGCCACCAACATCCTCTCCCTCTACCACCTCTCCTCCACCCTCCAATCCCCCAAATCCCCCAAACCACCCCCACCAGTCCCCGACCAACTCCTCCACCAGCTCCACACCATACGCGCCACCATCAGTCACCTCACTCGCCTCCAGAACACCCACAACCCAGCACAAAAATCCACCATCCCCTCAGATCTACTCTTATACTCCCACCTCTCCCCAATAGCCTCTTCTTGCCACAACCACCCCGAACTCCTCCACAAGTACATGACTTACATTCCCTTCTCTCTCTGCCCCTCCGATTCTGACCTCGCCGAATCCCTAATCCTACGCGGTTGTCACCCCCTCCCCCGCCGCCGCTGCTTCTCCAAAACCCCGCAAAAACCCCCCGTTTCCCTTCCTGAAAACCCCTTCCCCTCCTCCCTCCCTGACAACGCCGTAATTTGGGACCATTACTCTTGCAAATCCTTCGATTGCTTGAACAAACAAAACCCCAACCTCGGTTTTGAACCTTCTCGGGATATTTCGAGGTTCAATTCGTATAAGACCGATTTGGATCTCCCGATCCAGCAGTTGTTACAGATCGCGGCGGCCGCGAAGTCGGCGCTGCGCCTCGGCCTCGACGTCGGCGGCGGCACCGGCTCCTTTGCCGCCTCGATGAGGCTCCGCAACGTGACCGTGGTGACCACGACCATGAACGTGGCGGTGCCGAACAGCGAGGCCGTCGCACTGCGGGGGCTCGTGCCGCTGCACGTGCCCCTGCAGCAGCGGCTGCCGCTGTTCGACGGCGTCGTGGATCTGGTGCGGTGCGGGCGCGCCGTGAACCGGTGGATTCCTTTGACGGTGATGGAGTTTCTGCTGCTGGATGTGGACAGGGTGCTGAGGGGCGGAGGGTACCTTTGGGTGGACCATTTTTTCAGCAAAGTGGTGGACCTTGAGAAGGTGTATGCGCCGTTGATTGGGAAATTAGGGTACAAGAAGGTGAAGTGGGCGACGGGGAATAAGACCGATGCCAGTGGCGTCAAGAATGGAGAAGTTTACTTGACTGCGTTGCTGCAGAAGCCTGTGTCCAGATGA

Predicted protein sequences of Glyma05g25720

Limit To All Plant Sequences

>Glyma05g25720.2   sequence type=predicted peptide   gene model=Glyma05g25720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWINPLRVHTRLHTLCYFTDSQWSTPQTPLLNLKTSNSILAPHFQMGFTFSTMTLNLVLLMAMVATNILSLYHLSSTLQSPKSPKPPPPVPDQLLHQLHTIRATISHLTRLQNTHNPAQKSTIPSDLLLYSHLSPIASSCHNHPELLHKYMTYIPFSLCPSDSDLAESLILRGCHPLPRRRCFSKTPQKPPVSLPENPFPSSLPDNAVIWDHYSCKSFDCLNKQNPNLGFEPSRDISRFNSYKTDLDLPIQQLLQIAAAAKSALRLGLDVGGGTGSFAASMRLRNVTVVTTTMNVAVPNSEAVALRGLVPLHVPLQQRLPLFDGVVDLVRCGRAVNRWIPLTVMEFLLLDVDRVLRGGGYLWVDHFFSKVVDLEKVYAPLIGKLGYKKVKWATGNKTDASGVKNGEVYLTALLQKPVSR*

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