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Report for Sequence Feature Glyma05g25610

Feature Type:gene_model
Chromosome:Gm05
Start:31680583
stop:31683529
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g25610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G29550AT Annotation by Michelle Graham. TAIR10: tubulin beta-7 chain | chr2:12644258-12645932 REVERSE LENGTH=449 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006184GO-bp Annotation by Michelle Graham. GO Biological Process: GTP catabolic process SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0007017GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based process SoyBaseN/AISS
GO:0007018GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based movement SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051258GO-bp Annotation by Michelle Graham. GO Biological Process: protein polymerization SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005874GO-cc Annotation by Michelle Graham. GO Cellular Compartment: microtubule SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0045298GO-cc Annotation by Michelle Graham. GO Cellular Compartment: tubulin complex SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005198GO-mf Annotation by Michelle Graham. GO Molecular Function: structural molecule activity SoyBaseN/AISS
GO:0005200GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG1375 KOG Beta tubulin JGI ISS
PTHR11588Panther TUBULIN JGI ISS
PF00091PFAM Tubulin/FtsZ family, GTPase domain JGI ISS
PF03953PFAM Tubulin C-terminal domain JGI ISS
UniRef100_G7IML1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tubulin beta chain n=2 Tax=Medicago truncatula RepID=G7IML1_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K2Y0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2Y0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g25610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25610
ParalogEvidenceComments
Glyma08g08590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g126100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g25610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g25610
>Glyma05g25610.1   sequence type=CDS   gene model=Glyma05g25610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAAATCCTCCACATCCAGGGCGGCCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAAGTAATCTGCGACGAGCACGGCATCGACCACACCGGAAAGTACAGCGGCGACTCCGAACTCCAATTGGAACGCATCAATGTCTACTACAACGAGGCCAGCGGCGGAAGGTACGTTCCTCGCGCCGTCCTCATGGATCTGGAGCCTGGCACGATGGACTCGGTCAGATCCGGGCCTTTCGGGCAGATATTCCGCCCCGATAATTTTGTGTTCGGGCAGTCCGGCGCCGGCAACAACTGGGCCAAGGGTCACTACACGGAAGGTGCCGAGCTCATCGATTCCGTCTTGGATGTCGTGAGGAAGGAGGCCGAGAATTGCGATTGCTTACAAGGGTTTCAAGTGTGCCACTCTTTGGGAGGTGGAACTGGCTCGGGCATGGGAACGCTTCTCATCTCTAAGATTCGGGAAGAGTACCCTGATCGTATGATGTTGACGTTTTCCGTTTTTCCTTCCCCTAAGGTGTCGGACACTGTTGTGGAGCCGTACAATGCCACGCTTTCTGTGCACCAGCTTGTTGAAAACGCGGATGAGTGCATGGTCTTGGACAATGAGGCTCTCTATGATATCTGTTTCCGTACATTGAAGCTTGCTACACCAACTTTTGGGGACCTTAACCACCTCATTTCTGCTACCATGAGTGGAGTTACTTGTTGTCTACGTTTCCCTGGGCAGCTGAACTCTGATCTTAGGAAGCTTGCCGTGAATCTGATCCCATTCCCTCGTCTCCATTTCTTCATGGTTGGATTTGCACCATTGACATCTAGAGGATCCCAGCAGTACCGCAACCTGACTGTGCCAGAACTGACTCAGCAGATGTGGGATTCTAAGAACATGATGTGTGCGGCAGATCCTCGCCACGGTCGTTATTTGACCGCATCTGCGATGTTCCGTGGTAAGATGAGCACCAAGGAAGTGGATGAGCAGATGATCAATGTGCAGAACAAGAACTCTTCCTACTTTGTTGAGTGGATTCCCAACAATGTCAAGTCTAGCGTGTGTGATATCCCACCAAAGGGTCTTAAGATGTCATCCACTTTCATTGGGAATTCAACATCAATTCAGGAGATGTTCAGGAGAGTTAGTGAGCAGTTCACGGCGATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACTGGTGAGGGAATGGACGAAATGGAGTTCACCGAGGCCGAGAGTAACATGAACGATCTGGTGGCAGAGTACCAGCAATATCAGGATGCTACTGCTGATGAGGAAGAGTATGAGGATGAAGAGGAGGAGGCTTAA
Predicted protein sequences of Glyma05g25610
>Glyma05g25610.1   sequence type=predicted peptide   gene model=Glyma05g25610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSELQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEEYEDEEEEA*






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