Glyma05g25600 - SoyBase

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Report for Sequence Feature Glyma05g25600

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31672735
stop:	31676279
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34770	AT	Annotation by Michelle Graham. TAIR10: fatty acid hydroxylase 1 \| chr2:14666776-14668061 FORWARD LENGTH=237	SoyBase	E_val: 3.00E-115	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0080132	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty acid alpha-hydroxylase activity	SoyBase	N/A	ISS
KOG0539	KOG	Sphingolipid fatty acid hydroxylase	JGI		ISS
PTHR12863	Panther	FATTY ACID HYDROXYLASE	JGI		ISS
PF04116	PFAM	Fatty acid hydroxylase superfamily	JGI		ISS
UniRef100_G7IML5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fatty acid 2-hydroxylase n=1 Tax=Medicago truncatula RepID=G7IML5_MEDTR	SoyBase	E_val: 1.00E-126	ISS
UniRef100_I1K2X8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2X8_SOYBN	SoyBase	E_val: 6.00E-174	ISS

Expression Patterns of Glyma05g25600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25600

Paralog	Evidence	Comments
Glyma08g08580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g126000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g25600

Limit To All Plant Sequences

>Glyma05g25600.2   sequence type=transcript   gene model=Glyma05g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGGACGGAAAATCTGTAACGTTTTCTATTATAAGACAGGGTGTTAACGGCTAGAAGCCAAGGAATCAGTAACATAAAATGGAGGTTCAATTTGCCCTCCCATTTCACTAACACACACATCACATCATATCAGAGACTCCATCTCCCTCTCGCACGCGACGAGGGAGTCCCGCTTCGGAATCTCACCCCCTCTTTCTGCGAATTCGCAAGATGGTTGCTCAGAAATTCGTTGTCGACTTGAACAAGCCCCTTGTATTCCAGGTTGGGCATCTTGGGGAAGCCTACGATGATTGGGTTCACGATCCTATCGTAAGCAAAGAAGGTCCTCGGTTTTTCCAAAGCGGTTTCCTCGAGTTGTTCACACGCACTGCATGGTGGGTGATTCCAACCGTTTGGGTGCCGGTTGCGAGTTGGTTCATTTCCAACTCTGTCAAATCAGGCCTCCCTTCTCTTGATGTAGCTCTGCTCGTCTTTCTCGGCATCTTTGTTTGGACTTTGGCTGAATACACCTTGCACCGTTTCCTCTTCCATGTTAAAACCAAGAGCTACTGGGGAAATACCTTGCATTATCTTCTCCATGGCTGCCACCACAAGCACCCCATGGATAGCTATAGACTTGTTTTCCCCCCTGTAGCAGCAGCTATATTAGCCCTCCCGATCTGGAACTTGGTGAAGCTGATATGCACCCCTTCAGTTGCTCCTGCGGTGTTTGGAGGTATTTTGTTGGGCTATGTGATGTATGATTGCACCCATTACTACTTACACCATGGTCAACCAAAGTCTGATGTGCCCAAAAGTCTCAAGAAATATCACTTGAATCATCATTATCGGCTCCAGAACTATGGCTTTGGGATCACATCACCACTGTGGGATAAAGTTTTTGGAACGGTTCCTCCTCCTCAATCAAAGGGGGATGCCAAACGTAGATAAGTTACTGTCAAGGTTGCATTTGTTCATTGGTTAAGCATAGTTCATTCAGGAGCTTCAAACGAGATATGTTGATAATTCATTATTCATGTCTTGATTGTCTAATTATTTTGCTCCCCAATTGATGTTTCTGAGGGTTAACGTGCCACCATCTTGTGTCAAACATCCTGTAAAATTTCATACATTTATCAAATTTATAGTATAAAACTTGCCTCCCTGTGCACAGTTCTTTTATTTATGTTGTAACTTGGCTTTCCGCAGGAATCCTTGTAGCATCGGAATCCTTCGTGTAGGTTAACTTCTATCTTCAAAGAAATCAAG

Coding sequences of Glyma05g25600

Limit To All Plant Sequences

>Glyma05g25600.1   sequence type=CDS   gene model=Glyma05g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCTCAGAAATTCGTTGTCGACTTGAACAAGCCCCTTGTATTCCAGGTTGGGCATCTTGGGGAAGCCTACGATGATTGGGTTCACGATCCTATCGTAAGCAAAGAAGGTCCTCGGTTTTTCCAAAGCGGTTTCCTCGAGTTGTTCACACGCACTGCATGGTGGGTGATTCCAACCGTTTGGGTGCCGGTTGCGAGTTGGTTCATTTCCAACTCTGTCAAATCAGGCCTCCCTTCTCTTGATGTAGCTCTGCTCGTCTTTCTCGGCATCTTTGTTTGGACTTTGGCTGAATACACCTTGCACCGTTTCCTCTTCCATGTTAAAACCAAGAGCTACTGGGGAAATACCTTGCATTATCTTCTCCATGGCTGCCACCACAAGCACCCCATGGATAGCTATAGACTTGTTTTCCCCCCTGTAGCAGCAGCTATATTAGCCCTCCCGATCTGGAACTTGGTGAAGCTGATATGCACCCCTTCAGTTGCTCCTGCGGTGTTTGGAGGTATTTTGTTGGGCTATGTGATGTATGATTGCACCCATTACTACTTACACCATGGTCAACCAAAGTCTGATGTGCCCAAAAGTCTCAAGAAATATCACTTGAATCATCATTATCGGCTCCAGAACTATGGCTTTGGGATCACATCACCACTGTGGGATAAAGTTTTTGGAACGGTTCCTCCTCCTCAATCAAAGGGGGATGCCAAACGTAGATAA

>Glyma05g25600.2   sequence type=CDS   gene model=Glyma05g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCTCAGAAATTCGTTGTCGACTTGAACAAGCCCCTTGTATTCCAGGTTGGGCATCTTGGGGAAGCCTACGATGATTGGGTTCACGATCCTATCGTAAGCAAAGAAGGTCCTCGGTTTTTCCAAAGCGGTTTCCTCGAGTTGTTCACACGCACTGCATGGTGGGTGATTCCAACCGTTTGGGTGCCGGTTGCGAGTTGGTTCATTTCCAACTCTGTCAAATCAGGCCTCCCTTCTCTTGATGTAGCTCTGCTCGTCTTTCTCGGCATCTTTGTTTGGACTTTGGCTGAATACACCTTGCACCGTTTCCTCTTCCATGTTAAAACCAAGAGCTACTGGGGAAATACCTTGCATTATCTTCTCCATGGCTGCCACCACAAGCACCCCATGGATAGCTATAGACTTGTTTTCCCCCCTGTAGCAGCAGCTATATTAGCCCTCCCGATCTGGAACTTGGTGAAGCTGATATGCACCCCTTCAGTTGCTCCTGCGGTGTTTGGAGGTATTTTGTTGGGCTATGTGATGTATGATTGCACCCATTACTACTTACACCATGGTCAACCAAAGTCTGATGTGCCCAAAAGTCTCAAGAAATATCACTTGAATCATCATTATCGGCTCCAGAACTATGGCTTTGGGATCACATCACCACTGTGGGATAAAGTTTTTGGAACGGTTCCTCCTCCTCAATCAAAGGGGGATGCCAAACGTAGATAA

Predicted protein sequences of Glyma05g25600

Limit To All Plant Sequences

>Glyma05g25600.1   sequence type=predicted peptide   gene model=Glyma05g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAQKFVVDLNKPLVFQVGHLGEAYDDWVHDPIVSKEGPRFFQSGFLELFTRTAWWVIPTVWVPVASWFISNSVKSGLPSLDVALLVFLGIFVWTLAEYTLHRFLFHVKTKSYWGNTLHYLLHGCHHKHPMDSYRLVFPPVAAAILALPIWNLVKLICTPSVAPAVFGGILLGYVMYDCTHYYLHHGQPKSDVPKSLKKYHLNHHYRLQNYGFGITSPLWDKVFGTVPPPQSKGDAKRR*

>Glyma05g25600.2   sequence type=predicted peptide   gene model=Glyma05g25600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAQKFVVDLNKPLVFQVGHLGEAYDDWVHDPIVSKEGPRFFQSGFLELFTRTAWWVIPTVWVPVASWFISNSVKSGLPSLDVALLVFLGIFVWTLAEYTLHRFLFHVKTKSYWGNTLHYLLHGCHHKHPMDSYRLVFPPVAAAILALPIWNLVKLICTPSVAPAVFGGILLGYVMYDCTHYYLHHGQPKSDVPKSLKKYHLNHHYRLQNYGFGITSPLWDKVFGTVPPPQSKGDAKRR*

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