Glyma05g25580 - SoyBase

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Report for Sequence Feature Glyma05g25580

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31657717
stop:	31659808
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30760	AT	Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein \| chr1:10918321-10920441 FORWARD LENGTH=534	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
PTHR11748	Panther	D-LACTATE DEHYDROGENASE	JGI		ISS
PTHR11748:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01565	PFAM	FAD binding domain	JGI		ISS
PF08031	PFAM	Berberine and berberine like	JGI		ISS
UniRef100_G7IML7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Reticuline oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7IML7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K2X6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2X6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g25580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25580

Paralog	Evidence	Comments
Glyma08g08540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g125800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25580

Limit To All Plant Sequences

>Glyma05g25580.1   sequence type=CDS   gene model=Glyma05g25580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCACCAATCTCACACTTGCCACTTATAATAGTCCTCTTGTTATCATTTTCTTTAGCAAATTCAGCCTCACTACAAGAAAGTTTTGTCCAATGTCTCAACCTGAATTCGGACAGAACATTTCCATTTTACTCATCAATTTACACTCCAAGCAACCCTTCCTTCACCAGCATCCTTGACTCCTCCGCACAGAATCTAAGGCTTTTGGTGCCTTCAGCGCCAAAACCCGAGTTCATATTCACACCCTCCCGTGATTCCCATGTTCAAGCAGCAGTGATTTGCTCCAAGAAACTTGGGATTCACATTAGAGTGCGAAGTGGTGGTCATGACTATGAAGGAATATCCTACGTCTCTGAAATTGAAACCCCCTTCATAGTTGTGGATTTGGTCAAGCTCCGAGGCATCAATGTGGATGTAAAAAGCAACACTGCTTGGGTTCAAGCTGGTGCCACAACTGGTGAGGTGTACTACAGAATATATGAGAAGAGTTCAGTTCATGGTTTCCCTGCAGGCCTTTGCACAAGCTTAGGCATTGGAGGGCACATCACTGGAGGAGCATATGGAACCATGATGAGAAAATATGGCCTTGGAGTTGATAATGTCCTAGATGCTCAAATTGTTGATGCCAATGGAAGAGTTCTTGATAGGGAAGCCATGGGGGAAGACCTATTTTGGGCTATAAGAGGAGGTGGAGGTGGAAGCTTTGGTATCCTTCTTTGGTGGAAGATAAAGCTTGTTCCTGTGCCACCAACTGTGACAGTTTTTACAGTTACCAAGAGCCTTGAGCAAGGTGCAACCAAGATTCTTCACAGGTGGCAAGAAGTGGCACCTTATATTGATGAGAACCTCTTCATCAGAGTCATCATTCAGCCATCTAGTGATGGAAGAAACAAGACTCAGAGAACCATCACAACTTCTTACAATGCTCTCTTCCTTGGTGGGGCCAGAACACTCCTCCAAGTCATGAAGACAAGTTTCCCTGAATTGGGGTTGACAAGAAAGGATTGCTTGGAAACTAGCTGGATCAAATCTGTGCTCTATATTGCAGGCTTCCCGAGTGACACACCCCCAGAAGTTCTGCTCAAAGGAAAGTCAACATTCAAGAACTTCTTCAAGGCAAAATCAGATTTTGTGAGGGAACCAATACCGGAAACCGGGCTCGAGGGGTTGTGGCAAAGGTTGCTGGTTGAAGACAGCCCGTTGATGATTTGGAACCCATATGGTGGAAGGATGAGCCAATTTTCAGAATCTGAGACCCCATTTCCTCACAGAAATGGAACACTCTACAAAATTCAGTACTTGTCTTTGTGGCAAGAGGGAGACAAGAATGCTGCAAAGCACATAGATTGGATTAGGAAGCTCTACAACTACATGGGCCCTTATGTTTCTAGCTTGCCAAGGGAAGCATATGTGAATTACCGGGATCTTGACTTGGGAATAAACACCAAGAACAGCACAAGTTACATTCAAGCAAGTGCTTGGGGTTATAGGTATTACAAGAACAACTTCGACAGGTTGGTGAAGATTAAGACCAAAGTGGATCCTCAAAACGTGTTTAGGCATGAGCAAAGTATCCCACCACTTCCTCTCTGA

Predicted protein sequences of Glyma05g25580

Limit To All Plant Sequences

>Glyma05g25580.1   sequence type=predicted peptide   gene model=Glyma05g25580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSPISHLPLIIVLLLSFSLANSASLQESFVQCLNLNSDRTFPFYSSIYTPSNPSFTSILDSSAQNLRLLVPSAPKPEFIFTPSRDSHVQAAVICSKKLGIHIRVRSGGHDYEGISYVSEIETPFIVVDLVKLRGINVDVKSNTAWVQAGATTGEVYYRIYEKSSVHGFPAGLCTSLGIGGHITGGAYGTMMRKYGLGVDNVLDAQIVDANGRVLDREAMGEDLFWAIRGGGGGSFGILLWWKIKLVPVPPTVTVFTVTKSLEQGATKILHRWQEVAPYIDENLFIRVIIQPSSDGRNKTQRTITTSYNALFLGGARTLLQVMKTSFPELGLTRKDCLETSWIKSVLYIAGFPSDTPPEVLLKGKSTFKNFFKAKSDFVREPIPETGLEGLWQRLLVEDSPLMIWNPYGGRMSQFSESETPFPHRNGTLYKIQYLSLWQEGDKNAAKHIDWIRKLYNYMGPYVSSLPREAYVNYRDLDLGINTKNSTSYIQASAWGYRYYKNNFDRLVKIKTKVDPQNVFRHEQSIPPLPL*

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