SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48050 | AT | Annotation by Michelle Graham. TAIR10: Ku80 family protein | chr1:17723498-17726859 FORWARD LENGTH=680 | SoyBase | E_val: 0 | ISS |
| GO:0000723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via nonhomologous end joining | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0015074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA integration | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003690 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding | SoyBase | N/A | ISS |
| GO:0004003 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent DNA helicase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| KOG2326 | KOG | DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) | JGI | ISS | |
| PTHR12604 | Panther | KU AUTOANTIGEN DNA HELICASE | JGI | ISS | |
| PTHR12604:SF3 | Panther | gb def: putative dna helicase [schizosaccharomyces pombe] | JGI | ISS | |
| PF02735 | PFAM | Ku70/Ku80 beta-barrel domain | JGI | ISS | |
| PF03730 | PFAM | Ku70/Ku80 C-terminal arm | JGI | ISS | |
| PF03731 | PFAM | Ku70/Ku80 N-terminal alpha/beta domain | JGI | ISS | |
| PF08785 | PFAM | Ku C terminal domain like | JGI | ISS | |
| UniRef100_I1K2X5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2X5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8S562 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: KAP-2 n=1 Tax=Phaseolus vulgaris RepID=Q8S562_PHAVU | SoyBase | E_val: 0 | ISS |
|
Glyma05g25550 not represented in the dataset |
Glyma05g25550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g125700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g25550.2 sequence type=transcript gene model=Glyma05g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATAGATCCCTGATCCCCAGCCCCCTAAAACAATTTTTCTTTTCTCACAAAAATTTCTGTATTGGTGGGACCTTTGAGTTTTGAAGCGGGAAGACCGAAGATGAACGAAGCAGCAACTTACATATAAGTAACGCTCCTTCTTCTACAAGCTTCTCTCTCTGTCTCTCACTCTCTCTCTCTCTCTGCCTTTTCCACCCATGGCTCGAAACAAGGAAGCGTTGCTTTTGCTGCTTGATGTGGGCCCGTCAATGCATCCCGCTCTTTCTGAAATTGAGAAAGTCTGCTCCATGCTTGTGCATAAGAAGCTGATCTATAGCAAATATGATGAAGTGGGAATAGTCTTATTTGGAACTGAAGACACTAATAATGAGCTTACTACGGAAGTGGGTGGGTATCAACATGTTGTGGTTTTGAAAAATATTAAAGTTGTGGATGGAGATATTGTTGAGGCTTTACAACAACTGCCTCGAGGAACAACTGATGGTGATTTTCTTGATGCTGTCATTGTTGGCATGGATGTGTTAGTAAAAAAATTTGGAGTAACAAACAAGGGAAAGAAACGTGTGTGTCTTATTACAAATGCACAATGTCAAATAAAAGAATCTGATGAAGGAACAAAGGAAGAGCAAGTTACCACCATTGCCAAACAAATGACTGCCCATGGTATAAAAATGGAAAGTATAATTATGAGAGGAAAGCTTAGTCAAGATGCAAACAAGGGAATAATGGATGAGAATGATCGCTTGTTAAATATTTTTTCAAAGGAAACATCAACAAGATTGTTGTATGTGGAGAATCCAATTTCTTTGTTTGGTGCTCTTCGAACAAGAAATATAGCTCTGGTTACAGTTTTCAGAGGGCATCTTGAAATCAGTCCAAAACTGAGCATTAAGGTAATGGTATACAAGAAAACAACTGAAGAGAAATTTCCTTCTATGAAGAAATATTCTGATAAGGCTCCTCCAAATGATAAATTTGCTAAACATGAAGTCAAAATAGATTATGAACACAAGAGTTCTAAAGATCCTGACAAAGTTGTCCCCCCTGACCAAAGAATTAAAGGCTATCCTTATGGGCCTCAAATAGTTCCCATATCCTCTGCTGAGTGGGAGGCTGTTAAATTCAAACCGGAAAAAGGTGTGAAGCTCATGGGATTTACTGATTCTTCTAATGTATTTAGACACCATTACATGAAAGATGTATATGTTTTCCTACCTGAACCTGGAAATACAAGAGCCATGATTGCAGTTTCTGCAGTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCAATAGTACGTTGTGTTTGGAGACAGGGACAAGCGAATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATTCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATGGACAACAGCTAGAGGCTGCAGCTAACTTAATAAAAACGCTTGATCTTGCACCACATGGGCAAGAGGAAGTTTTGCTACCTGACTTTACACCAAATCCAGTGTTAGAGAAAAAGTCGAGGCGTTTATTGGGAGGAAAGAGATCTTTTTCAAATGATGAAGAGGTTAAAGGAAACATTACTGCTCAACCAGCCAATCTCACCGGAAATGCATCTGTTAATGTTGGGAAAATTGGGGATCTGACTCCCGTTCAATATTTTGAAGCCTTGATTTCACGCAGAGATAGTCCAGATTGGGTTGTAAAAGCCATTAATGAAATGAAAAATAAAATATTTGACCTGGTGGAGGACTCCCATGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCACTTCGCAAGGGTTGCATCCTTGAGCAGGAACCGGAACAGTTCAATGATTTCCTTAAACATCTATGGAATTTCTGTCAAGAGAAAAACCTCCCTAGTTTCTGTGAATATCTTGCTTCTAAGGAACTCACCTTGATCTCCAAAACAGAAGCTATAGACAGTGAAAATACTGATGACAAAGCCAGAAAAGGTTTCTTGGTTAAATCTGAACCAAAAGTTGATTGATTCCATCACTGTATGCGCTGAAATATCTGAGAGCTTCATTCTTTTGCCTCAGTAATGATTAGATATCTTGTAAAAACATCTGTTTTGGAACAAAAATCTAGGAATACCTTGTAAATTGTACTCATACTTTAGGATAATGATATGTCAAAACCAGACTGGAGAAGTATGATGCAGTTGCATGGTAGATGTTTAAGTTGGTTTATATTTCCCAATTTCCCTGAACTAATGCTATTTCACTCCAATAGCAGGGTTTACTGATGGTCCATTGAATTTTGGTCTTTTCTGTATGTCTGTATGTAGTTCAACCTTAATGCTGTATAACAAATTCATGTCTACATCTAGGAGCCACCAGAAGTTATGACTATTTCTTTGATTAGTTCCAAACATGTTTCAAATGTGTTTTCTGTCAAATGAGTCACTTGATTCTCTTTAATGGCTAAACTTGGCAATCAATTGGCCACTTGATC
>Glyma05g25550.1 sequence type=CDS gene model=Glyma05g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCGAAACAAGGAAGCGTTGCTTTTGCTGCTTGATGTGGGCCCGTCAATGCATCCCGCTCTTTCTGAAATTGAGAAAGTCTGCTCCATGCTTGTGCATAAGAAGCTGATCTATAGCAAATATGATGAAGTGGGAATAGTCTTATTTGGAACTGAAGACACTAATAATGAGCTTACTACGGAAGTGGGTGGGTATCAACATGTTGTGGTTTTGAAAAATATTAAAGTTGTGGATGGAGATATTGTTGAGGCTTTACAACAACTGCCTCGAGGAACAACTGATGGTGATTTTCTTGATGCTGTCATTGTTGGCATGGATGTGTTAGTAAAAAAATTTGGAGTAACAAACAAGGGAAAGAAACGTGTGTGTCTTATTACAAATGCACAATGTCAAATAAAAGAATCTGATGAAGGAACAAAGGAAGAGCAAGTTACCACCATTGCCAAACAAATGACTGCCCATGGTATAAAAATGGAAAGTATAATTATGAGAGGAAAGCTTAGTCAAGATGCAAACAAGGGAATAATGGATGAGAATGATCGCTTGTTAAATATTTTTTCAAAGGAAACATCAACAAGATTGTTGTATGTGGAGAATCCAATTTCTTTGTTTGGTGCTCTTCGAACAAGAAATATAGCTCTGGTTACAGTTTTCAGAGGGCATCTTGAAATCAGTCCAAAACTGAGCATTAAGGTAATGGTATACAAGAAAACAACTGAAGAGAAATTTCCTTCTATGAAGAAATATTCTGATAAGGCTCCTCCAAATGATAAATTTGCTAAACATGAAGTCAAAATAGATTATGAACACAAGAGTTCTAAAGATCCTGACAAAGTTGTCCCCCCTGACCAAAGAATTAAAGGCTATCCTTATGGGCCTCAAATAGTTCCCATATCCTCTGCTGAGTGGGAGGCTGTTAAATTCAAACCGGAAAAAGGTGTGAAGCTCATGGGATTTACTGATTCTTCTAATGTATTTAGACACCATTACATGAAAGATGTATATGTTTTCCTACCTGAACCTGGAAATACAAGAGCCATGATTGCAGTTTCTGCAGTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCAATAGTACGTTGTGTTTGGAGACAGGGACAAGCGAATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATTCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATGGACAACAGCTAGAGGCTGCAGCTAACTTAATAAAAACGCTTGATCTTGCACCACATGGGCAAGAGGAAGTTTTGCTACCTGACTTTACACCAAATCCAGTGTTAGAGCGCTTTTATCGTTATCTTGAGCTGAAATCAAAGGATCCAGATGTGGCAGTACCTCCTCTTGATGGCACACTCAAGAAAATTACAGAGCCTGATACTGACCTGCTTTTGCAAAATAAATCTGAAATAGACTCATTTTGTAGGTCTTTTGAGCTAAAGGGAAATCCCTTGAAAAAGTCGAGGCGTTTATTGGGAGGAAAGAGATCTTTTTCAAATGATGAAGAGGTTAAAGGAAACATTACTGCTCAACCAGCCAATCTCACCGGAAATGCATCTGTTAATGTTGGGAAAATTGGGGATCTGACTCCCGTTCAATATTTTGAAGCCTTGATTTCACGCAGAGATAGTCCAGATTGGGTTGTAAAAGCCATTAATGAAATGAAAAATAAAATATTTGACCTGGTGGAGGACTCCCATGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCACTTCGCAAGGGTTGCATCCTTGAGCAGGAACCGGAACAGTTCAATGATTTCCTTAAACATCTATGGAATTTCTGTCAAGAGAAAAACCTCCCTAGTTTCTGTGAATATCTTGCTTCTAAGGAACTCACCTTGATCTCCAAAACAGAAGCTATAGACAGTGAAAATACTGATGACAAAGCCAGAAAAGGTTTCTTGGTTAAATCTGAACCAAAAGTTGATTGA >Glyma05g25550.2 sequence type=CDS gene model=Glyma05g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCGAAACAAGGAAGCGTTGCTTTTGCTGCTTGATGTGGGCCCGTCAATGCATCCCGCTCTTTCTGAAATTGAGAAAGTCTGCTCCATGCTTGTGCATAAGAAGCTGATCTATAGCAAATATGATGAAGTGGGAATAGTCTTATTTGGAACTGAAGACACTAATAATGAGCTTACTACGGAAGTGGGTGGGTATCAACATGTTGTGGTTTTGAAAAATATTAAAGTTGTGGATGGAGATATTGTTGAGGCTTTACAACAACTGCCTCGAGGAACAACTGATGGTGATTTTCTTGATGCTGTCATTGTTGGCATGGATGTGTTAGTAAAAAAATTTGGAGTAACAAACAAGGGAAAGAAACGTGTGTGTCTTATTACAAATGCACAATGTCAAATAAAAGAATCTGATGAAGGAACAAAGGAAGAGCAAGTTACCACCATTGCCAAACAAATGACTGCCCATGGTATAAAAATGGAAAGTATAATTATGAGAGGAAAGCTTAGTCAAGATGCAAACAAGGGAATAATGGATGAGAATGATCGCTTGTTAAATATTTTTTCAAAGGAAACATCAACAAGATTGTTGTATGTGGAGAATCCAATTTCTTTGTTTGGTGCTCTTCGAACAAGAAATATAGCTCTGGTTACAGTTTTCAGAGGGCATCTTGAAATCAGTCCAAAACTGAGCATTAAGGTAATGGTATACAAGAAAACAACTGAAGAGAAATTTCCTTCTATGAAGAAATATTCTGATAAGGCTCCTCCAAATGATAAATTTGCTAAACATGAAGTCAAAATAGATTATGAACACAAGAGTTCTAAAGATCCTGACAAAGTTGTCCCCCCTGACCAAAGAATTAAAGGCTATCCTTATGGGCCTCAAATAGTTCCCATATCCTCTGCTGAGTGGGAGGCTGTTAAATTCAAACCGGAAAAAGGTGTGAAGCTCATGGGATTTACTGATTCTTCTAATGTATTTAGACACCATTACATGAAAGATGTATATGTTTTCCTACCTGAACCTGGAAATACAAGAGCCATGATTGCAGTTTCTGCAGTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCAATAGTACGTTGTGTTTGGAGACAGGGACAAGCGAATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATTCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATGGACAACAGCTAGAGGCTGCAGCTAACTTAATAAAAACGCTTGATCTTGCACCACATGGGCAAGAGGAAGTTTTGCTACCTGACTTTACACCAAATCCAGTGTTAGAGAAAAAGTCGAGGCGTTTATTGGGAGGAAAGAGATCTTTTTCAAATGATGAAGAGGTTAAAGGAAACATTACTGCTCAACCAGCCAATCTCACCGGAAATGCATCTGTTAATGTTGGGAAAATTGGGGATCTGACTCCCGTTCAATATTTTGAAGCCTTGATTTCACGCAGAGATAGTCCAGATTGGGTTGTAAAAGCCATTAATGAAATGAAAAATAAAATATTTGACCTGGTGGAGGACTCCCATGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCACTTCGCAAGGGTTGCATCCTTGAGCAGGAACCGGAACAGTTCAATGATTTCCTTAAACATCTATGGAATTTCTGTCAAGAGAAAAACCTCCCTAGTTTCTGTGAATATCTTGCTTCTAAGGAACTCACCTTGATCTCCAAAACAGAAGCTATAGACAGTGAAAATACTGATGACAAAGCCAGAAAAGGTTTCTTGGTTAAATCTGAACCAAAAGTTGATTGA
>Glyma05g25550.1 sequence type=predicted peptide gene model=Glyma05g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARNKEALLLLLDVGPSMHPALSEIEKVCSMLVHKKLIYSKYDEVGIVLFGTEDTNNELTTEVGGYQHVVVLKNIKVVDGDIVEALQQLPRGTTDGDFLDAVIVGMDVLVKKFGVTNKGKKRVCLITNAQCQIKESDEGTKEEQVTTIAKQMTAHGIKMESIIMRGKLSQDANKGIMDENDRLLNIFSKETSTRLLYVENPISLFGALRTRNIALVTVFRGHLEISPKLSIKVMVYKKTTEEKFPSMKKYSDKAPPNDKFAKHEVKIDYEHKSSKDPDKVVPPDQRIKGYPYGPQIVPISSAEWEAVKFKPEKGVKLMGFTDSSNVFRHHYMKDVYVFLPEPGNTRAMIAVSAVARAMKEMNKVAIVRCVWRQGQANVVIGVLTPNLSDKENIPDSFYLNVLPFAEDVREFQFPSFTNFPASWQPNGQQLEAAANLIKTLDLAPHGQEEVLLPDFTPNPVLERFYRYLELKSKDPDVAVPPLDGTLKKITEPDTDLLLQNKSEIDSFCRSFELKGNPLKKSRRLLGGKRSFSNDEEVKGNITAQPANLTGNASVNVGKIGDLTPVQYFEALISRRDSPDWVVKAINEMKNKIFDLVEDSHEGDNYPKALECLVALRKGCILEQEPEQFNDFLKHLWNFCQEKNLPSFCEYLASKELTLISKTEAIDSENTDDKARKGFLVKSEPKVD* >Glyma05g25550.2 sequence type=predicted peptide gene model=Glyma05g25550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARNKEALLLLLDVGPSMHPALSEIEKVCSMLVHKKLIYSKYDEVGIVLFGTEDTNNELTTEVGGYQHVVVLKNIKVVDGDIVEALQQLPRGTTDGDFLDAVIVGMDVLVKKFGVTNKGKKRVCLITNAQCQIKESDEGTKEEQVTTIAKQMTAHGIKMESIIMRGKLSQDANKGIMDENDRLLNIFSKETSTRLLYVENPISLFGALRTRNIALVTVFRGHLEISPKLSIKVMVYKKTTEEKFPSMKKYSDKAPPNDKFAKHEVKIDYEHKSSKDPDKVVPPDQRIKGYPYGPQIVPISSAEWEAVKFKPEKGVKLMGFTDSSNVFRHHYMKDVYVFLPEPGNTRAMIAVSAVARAMKEMNKVAIVRCVWRQGQANVVIGVLTPNLSDKENIPDSFYLNVLPFAEDVREFQFPSFTNFPASWQPNGQQLEAAANLIKTLDLAPHGQEEVLLPDFTPNPVLEKKSRRLLGGKRSFSNDEEVKGNITAQPANLTGNASVNVGKIGDLTPVQYFEALISRRDSPDWVVKAINEMKNKIFDLVEDSHEGDNYPKALECLVALRKGCILEQEPEQFNDFLKHLWNFCQEKNLPSFCEYLASKELTLISKTEAIDSENTDDKARKGFLVKSEPKVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
