Glyma05g25530 - SoyBase

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Report for Sequence Feature Glyma05g25530

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31599148
stop:	31602076
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03880	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr2:1181560-1183452 FORWARD LENGTH=630	SoyBase	E_val: 0	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF124	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7LQM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein (Fragment) n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LQM3_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233999E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233999E related cluster n=1 Tax=unknown RepID=UPI000233999E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g25530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25530

Paralog	Evidence	Comments
Glyma08g08510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g125500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25530

Limit To All Plant Sequences

>Glyma05g25530.1   sequence type=CDS   gene model=Glyma05g25530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTGTATCAAAGCACTTACAATTGTTGCGCCCAACAAGCTCGCGTTGTTGTTCATACAGTGTTAACTCGTCTCTCGTATCCCCACACTATGTGCCCCCAGAAACCGAGTCACTACTCAACCACTGTTACCGAAGGGACCTTCCCAGCGCCATGCATGTGTTGGATTCCATGGAAAGAAGAGGAGTTTGGGCCGATTCTATCACCTATTCTGAGCTCATCAAGTGTTGCTTGGCTCACGGGGCTGTCAGGGAAGGAAAACGCGTTCACCGCCACATATTCTCAAATGGGTATCACCCTAAAACGTTTTTGACCAACATTCTCATCAACATGTATGTCAAATTCAACCTCTTGGAAGAAGCACAGGTATTGTTCGATAAAATGCCTGAACGAAATGTTGTGTCGTGGACTACTATGATATCTGCTTACTCTAATGCCCAGCTCAACGACAGGGCCATGAGGCTCTTGGCTTTCATGTTTAGGGATGGTGTCATGCCTAACATGTTTACTTTCTCTTCGGTTCTGAGAGCGTGTGAGAGGTTGTATGATCTTAAACAGCTGCATTCTTGGATAATGAAAGTGGGGTTGGAGTCTGATGTATTTGTGCGCAGTGCGCTTATTGATGTTTACTCGAAAATGGGGGAGTTGTTGGAAGCTCTAAAGGTTTTTCGTGAGATGATGACTGGAGATTCTGTTGTTTGGAACTCCATTATTGCTGCTTTTGCTCAGCACAGTGATGGGGATGAGGCTTTACATCTTTACAAGAGCATGAGGAGAGTGGGTTTTCCGGCTGATCAGTCAACACTCACGAGTGTTTTGAGAGCGTGTACTAGTTTGTCATTGTTGGAGTTAGGGAGGCAAGCCCATGTCCATGTGCTAAAGTTTGATCAAGATCTTATCCTCAACAATGCCCTTTTAGATATGTATTGTAAGTGTGGTAGTTTGGAGGATGCAAAGTTCATTTTCAATCGGATGGCCAAGAAGGACGTAATCTCTTGGAGCACCATGATTGCTGGGTTAGCCCAAAATGGTTTTAGTATGGAAGCACTCAATTTATTTGAGTCCATGAAAGTGCAGGGTCCAAAACCAAATCATATTACAATTCTTGGGGTTCTGTTTGCTTGTAGTCATGCAGGGCTAGTAAATGAAGGTTGGTACTATTTTCGATCTATGAATAACTTGTATGGGATAGATCCTGGAAGAGAACACTATGGTTGCATGCTTGATCTTCTTGGAAGAGCTGAAAAGCTTGATGACATGGTTAAGTTAATACATGAAATGAATTGTGAGCCAGATGTTGTGACGTGGAGGACATTGCTTGATGCATGCAGGGCTCGTCAGAATGTGGATTTAGCCACGTATGCTGCTAAGGAGATTCTAAAGTTGGATCCACAGGACACAGGAGCCTATGTGTTGTTATCTAATATTTATGCAATTTCAAAAAGGTGGAATGATGTTGCTGAAGTTCGAAGGACTATGAAAAAAAGGGGCATAAGGAAAGAACCTGGATGTAGCTGGATTGAAGTCAATAAGCAGATACATGCTTTTATTTTGGGAGATAAATCTCATCCTCAAATAGATGAGATCAATAGACAGTTGAACCAGTTTATTTGTCGACTAGCTGGTGCTGGTTATGTTCCTGACACAAATTTTGTACTACAAGATCTTGAAGGGGAACAGAGAGAAGACTCTCTTCGATACCACAGTGAGAAACTGGCAATTGTTTTTGGTATTATGAGCTTTCCAAAGGAGAAAACTATTAGGATATGGAAGAACCTTAAGATCTGTGGAGATTGTCATAAATTTGCAAAACTCATAGCAGAGTTAGAGCAACGGCATATTGTAATTAGAGATCCTATTCGGTACCATCATTTTCAAGATGGGGTTTGCTCCTGTGGTGACTATTGGTAG

Predicted protein sequences of Glyma05g25530

Limit To All Plant Sequences

>Glyma05g25530.1   sequence type=predicted peptide   gene model=Glyma05g25530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGVSKHLQLLRPTSSRCCSYSVNSSLVSPHYVPPETESLLNHCYRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW*

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