Glyma05g25460 - SoyBase

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Report for Sequence Feature Glyma05g25460

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31563554
stop:	31565422
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34790	AT	Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein \| chr2:14673998-14677237 REVERSE LENGTH=532	SoyBase	E_val: 2.00E-180	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010197	GO-bp	Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
PTHR11748	Panther	D-LACTATE DEHYDROGENASE	JGI		ISS
PTHR11748:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01565	PFAM	FAD binding domain	JGI		ISS
PF08031	PFAM	Berberine and berberine like	JGI		ISS
UniRef100_I1K2W8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K2W8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9AYM8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CPRD2 protein n=1 Tax=Vigna unguiculata RepID=Q9AYM8_VIGUN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g25460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25460

Paralog	Evidence	Comments
Glyma08g08460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g124900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25460

Limit To All Plant Sequences

>Glyma05g25460.1   sequence type=CDS   gene model=Glyma05g25460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAACAACACACCATCAACAAAAATGATGCGTCTAAGCTCGTATTTTGTCGTAGCCATTGCTCTTCTCTTTTCATTTACACCTTCTTCGTCAGCAAATACTCATGAAAACTTTGTTCAATGTCTTTACAATTATCCCCATAATAACAATGTCACCTCAATCTCCAACGTCGTTTACACCCAAGCCAACTCTTCATACTCCTCTATACTTGACTTTTCCATTCAAAACCTTAGGTTCTCCAACGCAAGCTCAAAACCCCTTGTGATTGTGACACCTCTCACTGTTTCCCACATTCAAGCCACCATAATCTGTTCCCAACGCTATGGCATGCAGATTCGAACCCGAAGTGGAGGCCACGATTACGAGGGTCTCTCCTACGTTGCCAAGGATCCATTTGTCGTCCTTGACCTCATAAACCTTCGAAAAATCGAAGTGGACGCAGAAAACAGCACTGCATGGGTTCTAGCTGGTGCAACCATTGGTGAACTTTACTACAGCATTAGCCAGAAAAGCAAAACACTAGGGTTTCCAGCAGGTGTGTGCCCCCCTGTGGGAACTGGTGGCCATTTCAGTGGTGGTGGCTATGGATTCTTGATGCGTAAGTTCGGTCTTGCTGCTGATAATGTGATTGATGCTCACATAGTTGATGTGAAGGGTAATCTTCTTGATAGAGAAGCCATGGGTGAGGATCTGTTTTGGGCCATTAGAGGAGGTGGGGGAGCAAGCTTTGGAGTCATCGTGGCTTGGAAGATAAAACTTGTTTCAGTTCCATCAACTGTGACAGTGTTTAGGGTTCCAAGGACATTGGAACAAAATGCAACCGAGATTGTTCATAAGTGGCAGCTTGTGGCGAATAAACTTGACGAGGACCTAACCATAAGGATCAACTTTGGTAGGGCAACAAGTGAAAATGGGAACCTAACAGTTCAGGCACAATTTGAATCCATGTATCTTGGAGGTGTGGATCAGCTCATTCCTTTGATGCAAGAGAGCTTCCCAGAGTTGGGTTTGGTCAGAGAAGATTGTATTGAGACGAGTTGGATAGGTTCAATTCTCTACATGGCTGGATTTACAAACGGTGAATCCACTGATGTTTTGCTGAACAGAACTCAAGCAAACGGTGTGTCGTTCAACAAAGGAAAATCTGATTATGTGAGAGATCCCATTCCTGATGTAGGGTTAGAAGGGTTATGGCCCTTCTTTTTTGAAGATGAGGGTCAATCTTCTTTTGTTCAATTCACTCCTTATGGTTCTAGGATGGATGAGATTTCGGAATCCGAAATTCCATTCCCACATAGAGCTGGAAACATATTCCATATTCAGTATGGGGTGTCTTGGCAAGAGGAAGGGGATGAGGAAGCACAAAGGCACATAAACTGGATTAGAAGAATGTATAGTTATATGGAAACTTATGTTTCAAAGTCTCCTAGGGCTGCATATTTGAATTATAGAGACCTTGACATTGGGGTAAATAATAACAAGGGCTACACTAGCTACAGCCAAGCCAGCGTTTGGGGCCTTAAGTATTTCAAGAACAACTTCAACAGATTGGCAAGAGTGAAGACCAACGTTGATCCTCTAAACTTCTTCAGAAACGAGCAGAGCATACCTTCTCTTGTATCCAAGGGACGCAAATTATAG

Predicted protein sequences of Glyma05g25460

Limit To All Plant Sequences

>Glyma05g25460.1   sequence type=predicted peptide   gene model=Glyma05g25460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHNNTPSTKMMRLSSYFVVAIALLFSFTPSSSANTHENFVQCLYNYPHNNNVTSISNVVYTQANSSYSSILDFSIQNLRFSNASSKPLVIVTPLTVSHIQATIICSQRYGMQIRTRSGGHDYEGLSYVAKDPFVVLDLINLRKIEVDAENSTAWVLAGATIGELYYSISQKSKTLGFPAGVCPPVGTGGHFSGGGYGFLMRKFGLAADNVIDAHIVDVKGNLLDREAMGEDLFWAIRGGGGASFGVIVAWKIKLVSVPSTVTVFRVPRTLEQNATEIVHKWQLVANKLDEDLTIRINFGRATSENGNLTVQAQFESMYLGGVDQLIPLMQESFPELGLVREDCIETSWIGSILYMAGFTNGESTDVLLNRTQANGVSFNKGKSDYVRDPIPDVGLEGLWPFFFEDEGQSSFVQFTPYGSRMDEISESEIPFPHRAGNIFHIQYGVSWQEEGDEEAQRHINWIRRMYSYMETYVSKSPRAAYLNYRDLDIGVNNNKGYTSYSQASVWGLKYFKNNFNRLARVKTNVDPLNFFRNEQSIPSLVSKGRKL*

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