Glyma05g25380 - SoyBase

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Report for Sequence Feature Glyma05g25380

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31501614
stop:	31507765
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44450	AT	Annotation by Michelle Graham. TAIR10: methyltransferases \| chr5:17914360-17916017 REVERSE LENGTH=334	SoyBase	E_val: 2.00E-137	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
KOG3178	KOG	Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases	JGI		ISS
PTHR12753	Panther	AD-003 - RELATED	JGI		ISS
PF05891	PFAM	Putative hydroxyindole-O-methyltransferase	JGI		ISS
UniRef100_G8A1C6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase-like protein 11A n=1 Tax=Medicago truncatula RepID=G8A1C6_MEDTR	SoyBase	E_val: 7.00E-168	ISS
UniRef100_I1K2W2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K2W2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g25380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25380

Paralog	Evidence	Comments
Glyma08g08400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g124100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g25380

Limit To All Plant Sequences

>Glyma05g25380.2   sequence type=CDS   gene model=Glyma05g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTATTTCCTTTCCTCATATTCTCTATTGAGCACGAGCACTTTGGGACTCACAGCTTCGTACTTTTCTTCTTTCTCTTTCCCCTCGAACTCAAAAATAAGGTGCATGGACGCCGGCGGCTTAGATTCCGATGGCCGTGAATTCAACACCGCCGAGGACATGTGGAGGGAACAGGCGGGTGACCCTAGCAAGAAGACCCAGTGGTATCGTGACGGCGTCTCCTACTGGGAGGGTGTTAAGGCAAATATGGATGGGGTATTGGGAGGGTTTGCAAATGTGAACGAGCCTGACATAAGTTGCAGTGAGGATTTCTTGAACATTCTCTTGTCTGAACGTTTTCCTCCTGCTGCTGATGCTAGACGCCAACCACTTGTTGCTCTTGATTGTGGTTCTGGCATTGGCAGAGTCACCAAAAATCTGTTAATAAGATACTTCAATGAGGTTGATCTTCTGGAGCCAGTATCACATTTCTTAGAGACTGCACGTGAAACTTTGGCTTCGGGATGTCAGACAAATTCAGATATGCACAAAGCAGTTAATTTTTACTGTGTTCCTCTTCAGGATTTTACACCAGATACTGCAAGATATGATGTAATATGGATTCAATGGTGTATAGGTCATCTTACAGATGAAGATTTTGTTTCATTTTTCAAGAGTGCAAAGGTTGGCCTCAAAGCAGGTGGATTTTTTGTCCTGAAGGAGAATATTGCCAGATCTGGATTCGTGCTTGATAATGAAGACCGAAGTGTTACAAGATCTGATTTGTACTTCAAAGAGCTATTTTCTCGTTGTGGATTACATGTTTACAAATCAAAGGATCAGAAAGGATTCCCCGAAGAATTATTTGCTGTGAAGATGTATGCACTAACTACAGACCCTCCAAAGAAGGCTCCCCGAGCAAAATCCAAAACATCAACTAATAGACCTAGAACCATTATGTGA

Predicted protein sequences of Glyma05g25380

Limit To All Plant Sequences

>Glyma05g25380.2   sequence type=predicted peptide   gene model=Glyma05g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYFLSSYSLLSTSTLGLTASYFSSFSFPSNSKIRCMDAGGLDSDGREFNTAEDMWREQAGDPSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQDFTPDTARYDVIWIQWCIGHLTDEDFVSFFKSAKVGLKAGGFFVLKENIARSGFVLDNEDRSVTRSDLYFKELFSRCGLHVYKSKDQKGFPEELFAVKMYALTTDPPKKAPRAKSKTSTNRPRTIM*

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