SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06860 | AT | Annotation by Michelle Graham. TAIR10: polygalacturonase inhibiting protein 1 | chr5:2132373-2133434 FORWARD LENGTH=330 | SoyBase | E_val: 1.00E-88 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell communication | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0090353 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonase inhibitor activity | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF915 | Panther | JGI | ISS | ||
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_Q0WX05 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Polygalacturonase inhibiting protein n=1 Tax=Glycine max RepID=Q0WX05_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q0WX05 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase inhibiting protein n=1 Tax=Glycine max RepID=Q0WX05_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g25370 not represented in the dataset |
Glyma05g25370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g124000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g25370.1 sequence type=CDS gene model=Glyma05g25370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCTCTTAAGCATTCTTCTACTCATAGTCATGTCCTTCTCTCTCGCACTCTCAGAACTATGCAACCCACAAGACAAACAAACGCTACTCCAAATCAAGAAAGAGCTTGGCAACCCAACCACTCTTTCCTCATGGCACCCAAAGACCGACTGTTGCAACAACAGCTGGGTAGGTGTCTCATGCGACACCGTCACCCCAACATACCGCGTCGACAACCTCGACCTCTCCGAACTTAACCTCCGCAAACCCTACCCTATTCCCCCCTCCGTAGGTAGCCTTCCCTGCCTCAAATTTCTTTACATCACCAACAACCCCAACATCGTTGGCACAATACCCACCACCATCACCAAACTCACCAAGCTTCGTGAGCTCAACATCAGATACACCAATATCTCCGGCCAGATACCCCATTTCTTGTCCCAAATCAAAGCCCTCGGATTCCTCGACCTCTCCAACAACAAACTCTCCGGCAACCTCCCTTCCTGGCTTCCTTCTCTCCCCGACCTTTACGGAATCTCCTTCGACAACAACTACATCTCCGGCCCCATCCCAGACTTGTTCGCTTCCGTCTCGGAGAGGTTCGGGTTTATCTCACTCTCCGGCAACCGCCTCATCGGGAAGATTCCGGCGTCGCTGGGGAAGCCGGACATGAAGATTGTGGACTTGTCCCGGAACATGCTGGAGGGTGATGCGTCGGTGTTGTTTGGGTCGGAGAAACACACAGAGAGGATATATCTGGCAAACAACTTGTTTGCTTTTGATTTGGGAAAAGTAAGGTTGTCGAAGACCTTGGGGTTGTTGGATGTTGGCCATAATCTTATATATGGGACGCTTCCTAAGGGACTTACGTCGCTTAAGGATCTGTATTATTTGGATGTGAGCTACAATAATCTCTGTGGTGAGATTCCACGGGGTGGTAAATTGCAAGAATTTGATGCGTCTTTGTATGCTAATAACAAGTGCTTGTGTGGCTCCCCTCTTCCTAGCTGCAAACGGTTCTAG
>Glyma05g25370.1 sequence type=predicted peptide gene model=Glyma05g25370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLLSILLLIVMSFSLALSELCNPQDKQTLLQIKKELGNPTTLSSWHPKTDCCNNSWVGVSCDTVTPTYRVDNLDLSELNLRKPYPIPPSVGSLPCLKFLYITNNPNIVGTIPTTITKLTKLRELNIRYTNISGQIPHFLSQIKALGFLDLSNNKLSGNLPSWLPSLPDLYGISFDNNYISGPIPDLFASVSERFGFISLSGNRLIGKIPASLGKPDMKIVDLSRNMLEGDASVLFGSEKHTERIYLANNLFAFDLGKVRLSKTLGLLDVGHNLIYGTLPKGLTSLKDLYYLDVSYNNLCGEIPRGGKLQEFDASLYANNKCLCGSPLPSCKRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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