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Report for Sequence Feature Glyma05g25331

Feature Type:gene_model
Chromosome:Gm05
Start:31474087
stop:31478680
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g25331
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34830AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 35 | chr2:14693839-14696378 REVERSE LENGTH=427 SoyBaseE_val: 1.00E-77ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_G3FF80UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor 14-1 (Fragment) n=1 Tax=Dimocarpus longan RepID=G3FF80_9ROSI SoyBaseE_val: 2.00E-104ISS
UniRef100_UPI0002339827UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339827 related cluster n=1 Tax=unknown RepID=UPI0002339827 SoyBaseE_val: 0ISS

Proteins Associated with Glyma05g25331
LocusGene SymbolProtein Name
WRKY88 WRKY Transcription Factor

Expression Patterns of Glyma05g25331
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g25331 not represented in the dataset
Glyma05g25331 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25331
ParalogEvidenceComments
Glyma08g08340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25331 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g123600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g25331
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g25331
>Glyma05g25331.1   sequence type=CDS   gene model=Glyma05g25331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACTATCAAGGTGATTTAAGTGACATAATTCGTGCTAGTGGTGCATCGTATGGCACTTGCAGCACGGGAACTCCATCATCTGAAGCTGCTAATCCCTTCTCTCGTGGTCACTTGCAATTCTCTTCTGATCCCATGATTTTCTCTTGTGTTTTGGAAGGGTTCAATAGCAACTTCGGTGATCCCTTCTCAAACATGAGAGATCCCTTTCTACACGAGCTTGATTTGCCTCCTTCTGCCTACTTTAACATCACAACAAGTTCATCTGCAGAAATGAGCAGTTCTGGGGCATTGGAAGAAGCAACTTGTTTTGGTGGTGGGGTTGTTGCTGGTAGTAGTAGTAGTAGTAGTAATAGTTGTGTTTTGGCACAGAAGATTCTTGAGGATGATGATATGAGAAGGCCATGTAACAGCATATTTTCAAACATGATTCAGATCTCTCCCAATGATAAGTTACCCATCTCGCCAGCGGTGGATGCTTTGTCAAGGGCACTCAAGCCTTCTAGTATGGTAATTTCAGGTGACAACATGATTGATTCAAAGACCTCTATAGATCATTGCTTGGTGGACAACACAGAAGTGCAGATCTCATCTCCAAGGAATCCAGGTCTTAAGAGAAGAAAGAGCCAGGCAAAGAAGTCGATTTGTGTTCCTGCACCAACTGCACCAAATAGCAGACGAAGTGGCGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGATTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTCCAGCAAGGAAACAAGTTGAAAGGAGCAGAACAGACCCAAACATGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACACACAGAAATGCTCTCGCTGGTTCATCTCGATCCCAACCATCGAAAAACAACAACATTGCTGCTTCAAAGAATGAGGAAGAAGAGGAGGAGGAGAGCAACAGTGGCAGCAATAATGTAAATAACAGTGCATTTGTGAGGGAAGAAGAGAAGCAGCTTGAGATGGATGATGGAGAATTCAGTGATATTGGAATCCCTTATTGCAAGCCAATATCTAAGATGAAGAACAGCCAACAACTTGATCAGGGTTTGTTAGCAGAATTGGGAGAAATAGAATTTGCTGACTCAGTAAACCTATTGTCTCCACCACAAGGTTTTGATAATCAGAAAAGGGAATCCAACACTTTAGATTCATTCCATTTCTTTGACTGGAGAGGTGACAACAGCACCAAGTACCACCTTGTTTGA
Predicted protein sequences of Glyma05g25331
>Glyma05g25331.1   sequence type=predicted peptide   gene model=Glyma05g25331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNYQGDLSDIIRASGASYGTCSTGTPSSEAANPFSRGHLQFSSDPMIFSCVLEGFNSNFGDPFSNMRDPFLHELDLPPSAYFNITTSSSAEMSSSGALEEATCFGGGVVAGSSSSSSNSCVLAQKILEDDDMRRPCNSIFSNMIQISPNDKLPISPAVDALSRALKPSSMVISGDNMIDSKTSIDHCLVDNTEVQISSPRNPGLKRRKSQAKKSICVPAPTAPNSRRSGEVVPSDLWAWRKYGQKPIKDSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTHRNALAGSSRSQPSKNNNIAASKNEEEEEEESNSGSNNVNNSAFVREEEKQLEMDDGEFSDIGIPYCKPISKMKNSQQLDQGLLAELGEIEFADSVNLLSPPQGFDNQKRESNTLDSFHFFDWRGDNSTKYHLV*






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