Glyma05g25300 - SoyBase

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Report for Sequence Feature Glyma05g25300

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31429458
stop:	31433806
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g25300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68140	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1644) \| chr1:25539410-25540414 REVERSE LENGTH=334	SoyBase	E_val: 2.00E-94	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07800	PFAM	Protein of unknown function (DUF1644)	JGI		ISS
UniRef100_I1K2V2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2V2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2Z1Y7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pm27 protein n=1 Tax=Prunus mume RepID=Q2Z1Y7_PRUMU	SoyBase	E_val: 3.00E-133	ISS

Expression Patterns of Glyma05g25300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25300

Paralog	Evidence	Comments
Glyma08g08310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g123300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g25300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g25300

Limit To All Plant Sequences

>Glyma05g25300.2   sequence type=transcript   gene model=Glyma05g25300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCGTAGCGTAGAAATGACTCCATCTTTGCGATTCTCAACTTTCTCTCTCTAAAAACCATCAGAGCATGAGAGAGAAACTTCCCTGCCCTTCCATTTCCCTCTCGATTCCTTCGCCTTTGCTTTCGATCCTTTGCTAGAAGAGAACCTTATTCCTTTCTCTCTCTCTCTCTCCCTTCAAATTCCCTTCCTTTTCTTCCATTTTCACTCTCTCCCTAACCGCCCGATGCACTTTGGTTTTGCAAACTAATTCGTTGGCTAAATTACTCCAATCGTGAACTGGATTGCATGATCTTGCACTTGTGTGGGAGCTTCAATCCCAATTATATGCACCAACTTGGTTTGGTTCTGTTGGAATATCGGAAATGGCAAAAGGTAGCAGGGGAAGACACAGGATTGCTTCTCGTCAATTCAGAGTGACTCCATACCCACTGGCTTCTTGCAAAAGGGACATTTGTGAGGACCTCTGCCAAAACAAATGTTCTAAGGCTTTGGAAAAGAAAGAGTGGGAAGATGTTACATGTTCTGTGTGCATGGAATATCCACACAATGCTGTTCTTCTTCTTTGTTCTTCTCATGACAAGGGTTGCCGTCCCTATATGTGTGGAACTAGCTTTCGTCATTCCAACTGTCTTGATCAGTACAAGAAAGCTTATACCAAGGCAATTTCACCTAATAGGCAACCTATGCAAGGCACTCCAGGTCTGCTACAAGATTCAAACATGCATCTTGAGAAGAGTGAATCCACAGAGCTTGCATGTCCTCTATGCAGGGGTCAGGTGAAAGGTTGGACCGTTGTGGAACCTGTTCGGGACTATCTGAATGCAAAGAAAAGAGGCTGCATGCAGGATGACTGCTCATTTGTTGGGAACTATAAGGAGTTGAAGAAGCATGTGCGGGCAGAGCATCCCTCAGCACGCCCACGGATGGTGGATCCTGCCGATGAACAGAAATGGAGATGGCTCGAGTGGGAGCGTGAAAGAGAAGATGTTATCAGCACAGTAACATCAGCAATGCCTGGGGCAGTAGTTTTTGGAGATTATGTTATAGAAGGTCATCATAATGACTTTGATACAGATGAAGAGGAGGGTGCAGGTAATGCAGAAAGAAATGGAAGATTTCAGATGGGTTTAGAGGCAATGAATTTCTTCCTCCTGTTGCATGCGGTTCGGCAAGGGAATGAGCTTAACAACCTTGGTAGACGGCTGAGGCCTGAGCTGACCCACAACAGGGTTGCAGGTCAGAATGCAGCTGCCGTGCTGGATATCTCAGATGAAGACAATGATAATGATGGCAGGTACAATGAAGATAATAATGGCAGGTACAATGAAGATACTGATGGCGGTGTATCTTTGGTTAGCCGTCTCCACCGCCATGGTGGTGGCAGAGTTTTATTGGGTCGTTCTGGTAGGAGGCGGAGATGTAGAGAAGCACGTGCAAGGATTGGAGATAGTTGA

Coding sequences of Glyma05g25300

Limit To All Plant Sequences

>Glyma05g25300.1   sequence type=CDS   gene model=Glyma05g25300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGGTAGCAGGGGAAGACACAGGATTGCTTCTCGTCAATTCAGAGTGACTCCATACCCACTGGCTTCTTGCAAAAGGGACATTTGTGAGGACCTCTGCCAAAACAAATGTTCTAAGGCTTTGGAAAAGAAAGAGTGGGAAGATGTTACATGTTCTGTGTGCATGGAATATCCACACAATGCTGTTCTTCTTCTTTGTTCTTCTCATGACAAGGGTTGCCGTCCCTATATGTGTGGAACTAGCTTTCGTCATTCCAACTGTCTTGATCAGTACAAGAAAGCTTATACCAAGGCAATTTCACCTAATAGGCAACCTATGCAAGGCACTCCAGGTCTGCTACAAGATTCAAACATGCATCTTGAGAAGAGTGAATCCACAGAGCTTGCATGTCCTCTATGCAGGGGTCAGGTGAAAGGTTGGACCGTTGTGGAACCTGTTCGGGACTATCTGAATGCAAAGAAAAGAGGCTGCATGCAGGATGACTGCTCATTTGTTGGGAACTATAAGGAGTTGAAGAAGCATGTGCGGGCAGAGCATCCCTCAGCACGCCCACGGATGGTGGATCCTGCCGATGAACAGAAATGGAGATGGCTCGAGTGGGAGCGTGAAAGAGAAGATGTTATCAGCACAGTAACATCAGCAATGCCTGGGGCAGTAGTTTTTGGAGATTATGTTATAGAAGGTCATCATAATGACTTTGATACAGATGAAGAGGAGGGTGCAGGTAATGCAGAAAGAAATGGAAGATTTCAGATGGGTTTAGAGGCAATGAATTTCTTCCTCCTGTTGCATGCGGTTCGGCAAGGGAATGAGCTTAACAACCTTGGTAGACGGCTGAGGCCTGAGCTGACCCACAACAGGGTTGCAGGTCAGAATGCAGCTGCCGTGCTGGATATCTCAGATGAAGACAATGATAATGATGGCAGGTACAATGAAGATAATAATGGCAGGTACAATGAAGATACTGATGGCGGTGTATCTTTGGTTAGCCGTCTCCACCGCCATGGTGGTGGCAGAGTTTTATTGGGTCGTTCTGGTAGGAGGCGGAGATGTAGAGAAGCACGTGCAAGGATTGGAGATAGTTGA

>Glyma05g25300.2   sequence type=CDS   gene model=Glyma05g25300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGGTAGCAGGGGAAGACACAGGATTGCTTCTCGTCAATTCAGAGTGACTCCATACCCACTGGCTTCTTGCAAAAGGGACATTTGTGAGGACCTCTGCCAAAACAAATGTTCTAAGGCTTTGGAAAAGAAAGAGTGGGAAGATGTTACATGTTCTGTGTGCATGGAATATCCACACAATGCTGTTCTTCTTCTTTGTTCTTCTCATGACAAGGGTTGCCGTCCCTATATGTGTGGAACTAGCTTTCGTCATTCCAACTGTCTTGATCAGTACAAGAAAGCTTATACCAAGGCAATTTCACCTAATAGGCAACCTATGCAAGGCACTCCAGGTCTGCTACAAGATTCAAACATGCATCTTGAGAAGAGTGAATCCACAGAGCTTGCATGTCCTCTATGCAGGGGTCAGGTGAAAGGTTGGACCGTTGTGGAACCTGTTCGGGACTATCTGAATGCAAAGAAAAGAGGCTGCATGCAGGATGACTGCTCATTTGTTGGGAACTATAAGGAGTTGAAGAAGCATGTGCGGGCAGAGCATCCCTCAGCACGCCCACGGATGGTGGATCCTGCCGATGAACAGAAATGGAGATGGCTCGAGTGGGAGCGTGAAAGAGAAGATGTTATCAGCACAGTAACATCAGCAATGCCTGGGGCAGTAGTTTTTGGAGATTATGTTATAGAAGGTCATCATAATGACTTTGATACAGATGAAGAGGAGGGTGCAGGTAATGCAGAAAGAAATGGAAGATTTCAGATGGGTTTAGAGGCAATGAATTTCTTCCTCCTGTTGCATGCGGTTCGGCAAGGGAATGAGCTTAACAACCTTGGTAGACGGCTGAGGCCTGAGCTGACCCACAACAGGGTTGCAGGTCAGAATGCAGCTGCCGTGCTGGATATCTCAGATGAAGACAATGATAATGATGGCAGGTACAATGAAGATAATAATGGCAGGTACAATGAAGATACTGATGGCGGTGTATCTTTGGTTAGCCGTCTCCACCGCCATGGTGGTGGCAGAGTTTTATTGGGTCGTTCTGGTAGGAGGCGGAGATGTAGAGAAGCACGTGCAAGGATTGGAGATAGTTGA

Predicted protein sequences of Glyma05g25300

Limit To All Plant Sequences

>Glyma05g25300.1   sequence type=predicted peptide   gene model=Glyma05g25300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGSRGRHRIASRQFRVTPYPLASCKRDICEDLCQNKCSKALEKKEWEDVTCSVCMEYPHNAVLLLCSSHDKGCRPYMCGTSFRHSNCLDQYKKAYTKAISPNRQPMQGTPGLLQDSNMHLEKSESTELACPLCRGQVKGWTVVEPVRDYLNAKKRGCMQDDCSFVGNYKELKKHVRAEHPSARPRMVDPADEQKWRWLEWEREREDVISTVTSAMPGAVVFGDYVIEGHHNDFDTDEEEGAGNAERNGRFQMGLEAMNFFLLLHAVRQGNELNNLGRRLRPELTHNRVAGQNAAAVLDISDEDNDNDGRYNEDNNGRYNEDTDGGVSLVSRLHRHGGGRVLLGRSGRRRRCREARARIGDS*

>Glyma05g25300.2   sequence type=predicted peptide   gene model=Glyma05g25300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGSRGRHRIASRQFRVTPYPLASCKRDICEDLCQNKCSKALEKKEWEDVTCSVCMEYPHNAVLLLCSSHDKGCRPYMCGTSFRHSNCLDQYKKAYTKAISPNRQPMQGTPGLLQDSNMHLEKSESTELACPLCRGQVKGWTVVEPVRDYLNAKKRGCMQDDCSFVGNYKELKKHVRAEHPSARPRMVDPADEQKWRWLEWEREREDVISTVTSAMPGAVVFGDYVIEGHHNDFDTDEEEGAGNAERNGRFQMGLEAMNFFLLLHAVRQGNELNNLGRRLRPELTHNRVAGQNAAAVLDISDEDNDNDGRYNEDNNGRYNEDTDGGVSLVSRLHRHGGGRVLLGRSGRRRRCREARARIGDS*

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