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Report for Sequence Feature Glyma05g25245

Feature Type:gene_model
Chromosome:Gm05
Start:31377072
stop:31379719
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g25245
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G17980AT Annotation by Michelle Graham. TAIR10: Sec1/munc18-like (SM) proteins superfamily | chr2:7824352-7826404 FORWARD LENGTH=627 SoyBaseE_val: 0ISS
GO:0006904GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis SoyBaseN/AISS
GO:0009306GO-bp Annotation by Michelle Graham. GO Biological Process: protein secretion SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG1301 KOG Vesicle trafficking protein Sly1 (Sec1 family) JGI ISS
PTHR11679Panther VESICLE PROTEIN SORTING-ASSOCIATED JGI ISS
PTHR11679:SF2Panther SLY1-RELATED JGI ISS
PF00995PFAM Sec1 family JGI ISS
UniRef100_G7ZYG6UniRef Annotation by Michelle Graham. Most informative UniRef hit: SEC1 family transport protein SLY1 n=1 Tax=Medicago truncatula RepID=G7ZYG6_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A6E9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A6E9 related cluster n=1 Tax=unknown RepID=UPI000233A6E9 SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g25245
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g25245 not represented in the dataset
Glyma05g25245 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g25245
ParalogEvidenceComments
Glyma08g08260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g25245 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g122800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g25245
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g25245
>Glyma05g25245.1   sequence type=CDS   gene model=Glyma05g25245   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTGAATCTCCGTCAGAAGCAAACAGAATGCATCGCGCGCATGCTGAACCTGAACCAGCCCTTAAACGCCGCCGGAACCGCGAACGAAGAGGTCTACAAGATCCTCATCTACGACAAGTTCTGCCAGAACATCCTCTCCCCTCTGATCCACGTCAAGGACCTCCGCAAGCACGGCGTCACCCTCTACTTCCTCATCGACAAGGATCGCAAGCCCGTTCACGACGTTCCCGCAGTTTATTTCGTCCAGCCCAACCAACCCAACGTGCAACGCATCGTTTCCGACGCCTCCAAATCGCTCTACCAGAGCCTCCACCTCAACTTCTCCACCTCCATCCCTCGCCCCCTCCTCGAAGACCTCGCCACCGGAACCCTAAATTCCGATTCGATTCAGCGAGTCTCCAAGGTTCACGATCAGTATCTGGAATTCGTAACCCTAGAGGATAACCTTTTTTCGCTGGCCCACAAGCCTTGTTATGTTCAACTCAACGACCCTTCCGCTGGGGACAAGGAAATTGAGGAGCTTGTTGATAAGATCGTTGGTGGGTTGTTTTGCGTGCTGGCGACTCTGGCCGTTGTGCCGGTTATTCGGTGCCCGCGTGGCGGCCCTGCGGAGATGGTGGCTTCTGCGTTGGATCAGCGGATTAGGGATCACTTGTTGTCTAAGAATAACTTGTTTACTGAGGGTGGGAACTTTGTGAGCTCGTTTCAGCGCCCTGTGTTGTGTATTTTCGACCGGAATTTCGAGTTGCCGGTGGCAATTCAGCATGATTTTCGCTACCGGCCGCTTGTCCATGATGTGCTGGGGTTGAAGCTGAATAGGCTGAGTGTGCAGGGGGAGAAGGGTGGGATGAGATCTTATGAGTTGGATAGTGCTGATTCTTTTTGGGTTGCGAATGGGTCGTTGGAGTTCCCGGAGGTTGCGGTGGAGATTGAGACGCAGTTGAATAAGTATAAGAAGGATGTGGATGAGGTGAACAAGAGGACTGGTGGGACTCATGGCGCGGAGTTTGATGGGACGGATTTGATCGGGAACACGAAGCATTTGATGAACGCTGTGAATTCTCTGCCTGAGTTGACTGAGAGGAAGCAGGTGATCGATAAGCACACCAACATTGCGACCGTGTTGTTGGGCGAGATCAAGGAGAGGTCTCTTGATTCTTATGCTAAGAAGGAGAATGACATGATGGTTAGAGGGGGCATTGAACGGGCTGACCTGCTTGGCGTGCTCAAAGGGAAGGGAACGAAGATGGATAAGCTTAGGTTTGCCATCATATATCTCATTTCGTCGGAAACCATTAATCAGTCGGAAGTGGAAGCTGTGGAAGCGGCGCTGAGAGAGTCTGAGGTTGATACTGCTGCTTTTCAGTATGTGAAGAAGATCAAGTCGTTGAATGTTTCGTTGGCATCGGCAAATTCTGCCAGCAGAAGTAATATTGTTGATTGGGCTGAGAAGCTCTATGGACAGTCAATTAGTGCAGTGACGGCTGGTGTAAAAAATCTTCTATCTAATGACCGGCAGCTAGCGTTGGCGAGGACAGTTGAGGCCTTGATTGAAGGGAGGCCAAACCCTGAAACAGATTCATACCTCTCGTTTGATCCCCGTGCTCCAAAGTCTGGTTCGGGAGCAAGTAGCAGCCATATGAAAGGACCATTTAAGGAAGCAATTGTGTTCATGATTGGTGGTGGGAATTACGTTGAATATTGTAGTCTGCAAGAGCTTGCACAACATCAGCAACCTGCCAAACATATTATATATGGAACAACAGAAATGCTAACTGGAGTTGACTTTGTAGAGCAGCTAACATTGTTGGGGCAGAAGATGGGCTTGGGTAATGTTGGTTCTAGTTCTACCCCAGCTCAGTAG
Predicted protein sequences of Glyma05g25245
>Glyma05g25245.1   sequence type=predicted peptide   gene model=Glyma05g25245   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLNLRQKQTECIARMLNLNQPLNAAGTANEEVYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPNQPNVQRIVSDASKSLYQSLHLNFSTSIPRPLLEDLATGTLNSDSIQRVSKVHDQYLEFVTLEDNLFSLAHKPCYVQLNDPSAGDKEIEELVDKIVGGLFCVLATLAVVPVIRCPRGGPAEMVASALDQRIRDHLLSKNNLFTEGGNFVSSFQRPVLCIFDRNFELPVAIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMRSYELDSADSFWVANGSLEFPEVAVEIETQLNKYKKDVDEVNKRTGGTHGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGGIERADLLGVLKGKGTKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDTAAFQYVKKIKSLNVSLASANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALARTVEALIEGRPNPETDSYLSFDPRAPKSGSGASSSHMKGPFKEAIVFMIGGGNYVEYCSLQELAQHQQPAKHIIYGTTEMLTGVDFVEQLTLLGQKMGLGNVGSSSTPAQ*






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