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Report for Sequence Feature Glyma05g25030

Feature Type:gene_model
Chromosome:Gm05
Start:31198008
stop:31199885
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16280AT Annotation by Michelle Graham. TAIR10: RNA binding;abscisic acid binding | chr4:9208564-9214412 REVERSE LENGTH=533 SoyBaseE_val: 2.00E-47ISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0040029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0000785GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromatin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR24011Panther FAMILY NOT NAMED JGI ISS
PTHR24011:SF260Panther JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_I1KMP5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KMP5_SOYBN SoyBaseE_val: 3.00E-55ISS
UniRef100_Q531A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: FCA gamma n=1 Tax=Pisum sativum RepID=Q531A8_PEA SoyBaseE_val: 1.00E-53ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g25030 not represented in the dataset

Glyma05g25030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma05g25030.1   sequence type=CDS   gene model=Glyma05g25030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCCTTTCTTCAATAGCCTTGTATCAAGTGGAGTTCTAAATCTGGCCATGGTTGAGTGTGTGGACAATCAGAAGTCTCTTGTCTTCTCCCAAATAGTTGCTACAAAATACACCAGAAGAATCAATGTCATTTGTTTGATGAGTTGTTGTTTCATAAAATATGCTACCTCCGAAGAAGCTGATCAGGCAATTAGAGCATTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGTTGTTGAGTACAAATTATTTGTGGGCTCTTTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGCGATGAGAAGAAACAAAGTCGTGGTATGTTTCCTACCTATATGGGATATTAG

>Glyma05g25030.1   sequence type=predicted peptide   gene model=Glyma05g25030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VPFFNSLVSSGVLNLAMVECVDNQKSLVFSQIVATKYTRRINVICLMSCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGVVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGMFPTYMGY*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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