Glyma05g24950 - SoyBase

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Report for Sequence Feature Glyma05g24950

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31117293
stop:	31120941
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26410	AT	Annotation by Michelle Graham. TAIR10: methyltransferases;nucleic acid binding \| chr3:9669508-9671273 REVERSE LENGTH=477	SoyBase	E_val: 0	ISS
GO:0006400	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA modification	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0032259	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation	SoyBase	N/A	ISS
GO:0080180	GO-bp	Annotation by Michelle Graham. GO Biological Process: 2-methylguanosine metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
KOG2671	KOG	Putative RNA methylase	JGI		ISS
PTHR13370	Panther	RNA METHYLASE-RELATED	JGI		ISS
PF01170	PFAM	Putative RNA methylase family UPF0020	JGI		ISS
UniRef100_D7LR49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase/ nucleic acid binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LR49_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1K2S5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2S5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g24950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24950

Paralog	Evidence	Comments
Glyma08g08040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g121000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g24950

Limit To All Plant Sequences

>Glyma05g24950.1   sequence type=CDS   gene model=Glyma05g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTACTTGTGCGTTTTCTTCCACAGGTTATTGGATTACAGAAAACCAGAAGTGGAATCTCTGGCGCAACTCTTCGGAGCCACCGAGGACCCTAAAAATGGCGACGTTCCCTCCCAAATGCAATGGAAGCTCCCTATTCACTACCACCCCGATTCCCCTTTCCATTTCGTAAACCTCCCTTCCGAAAAACTCGCTCGTGACATCGCCACCCGAAGCATACTTGTTAAGGGGATGTATGAGCTGTGGGGTGAAGGGAGTAGCTATGAGGAGTTGAAGGAGTCTGTGTTGAGTTACCCTGACGAAAGGAAGTTGCCGTACTTGGATTCTGATAGCACTTTCAAGATTACTGTCGATAGCTTTGGGAAGGTCATTAGCTTGGAGGACCAAAAGGAGCTCATTCAAGGGCTCTCTTATATCCCTTTCAAGGGACGAGTAAAGTTGAAAAACCCAGATCACAACTTCTGGCTTATAGAAGTTGATAATTATGGAGGTAATAATGGTCTTCCTCCAATTGTACAAAAGAGAGTCTTCTTTGGTCGCGAAGTTGGTGGGGCAGATAGGAAGCTTTTACCCACATATCAGTTGAAAAGCCGTACTTATCTTGGGCCAACAGCTATGGATGCTGAAATTGCTTTTCTAATGGCCAATCAAGCACTAGCTACTTCTGGAAAACTAGTTTATGACCCTTTTGTTGGAACTGGAAGTATTCTTGTTGCAGCAGCTCATTTTGGAGCAATAACCATGGGTGCTGACATTGACATTAGGGTAGTCCGTGATGGACGTGGTCCCAACTGTAATGTTTGGAGTAATTTTAAGCAGTATGGATTGCCAATGCCTGTTGGTCTTCTAAGAGCAGACAACAACCTTCCTCCCTGGCGTTCTACGCTGAAAGAGGTATTTGATGCCATAATATGTGATCCTCCTTACGGAGTGCGAGCTGGGGGACGCAAATCTGGTGGTCGGAAGCTGCTAAAGGGGGCTGTGGAACCTTACACCATTCCTGATGAAAAAAGAACAAATCACATACCATCAACTGCAGCTTACAGTTTAGTTGAGTGCGTGCATGATTTGTTTGATCTTGCAGCCAAGATGCTTCTAATGGGGGGCAGGCTTGTGTTTTTCTATCCTGTATTGAGAGAAGATGGTTTTCCTGAAAACCATTTCCCAGAGCACCCATGTTTTAAACTGATTTCTTCGTCGGAGCAGATCCTTAGTTCGCGTTATAGCAGGGTGTTACTGACAATGGTCAAGACAGGTCCTTACACAGAGGAAATAGCCGAGGCGGCTAGGAAAAAACACATTGAATTTAAGGAGAACCATGTAAAATGGTTAGAAGATGGTAATCTTCATTCTGCAGTTTTCAGTCCTGCTGATGATCAATTTACGGAGGCTGGTGATCCCAAGTTAATTAAGGATCCAAAGCCTAAATACAGAGGAAAGTACGTTTAG

Predicted protein sequences of Glyma05g24950

Limit To All Plant Sequences

>Glyma05g24950.1   sequence type=predicted peptide   gene model=Glyma05g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWYLCVFFHRLLDYRKPEVESLAQLFGATEDPKNGDVPSQMQWKLPIHYHPDSPFHFVNLPSEKLARDIATRSILVKGMYELWGEGSSYEELKESVLSYPDERKLPYLDSDSTFKITVDSFGKVISLEDQKELIQGLSYIPFKGRVKLKNPDHNFWLIEVDNYGGNNGLPPIVQKRVFFGREVGGADRKLLPTYQLKSRTYLGPTAMDAEIAFLMANQALATSGKLVYDPFVGTGSILVAAAHFGAITMGADIDIRVVRDGRGPNCNVWSNFKQYGLPMPVGLLRADNNLPPWRSTLKEVFDAIICDPPYGVRAGGRKSGGRKLLKGAVEPYTIPDEKRTNHIPSTAAYSLVECVHDLFDLAAKMLLMGGRLVFFYPVLREDGFPENHFPEHPCFKLISSSEQILSSRYSRVLLTMVKTGPYTEEIAEAARKKHIEFKENHVKWLEDGNLHSAVFSPADDQFTEAGDPKLIKDPKPKYRGKYV*

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