|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G03050 | AT | Annotation by Michelle Graham. TAIR10: ENTH/ANTH/VHS superfamily protein | chr1:707726-709860 FORWARD LENGTH=599 | SoyBase | E_val: 0 | ISS |
GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
GO:0048268 | GO-bp | Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0030118 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat | SoyBase | N/A | ISS |
GO:0005543 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid binding | SoyBase | N/A | ISS |
GO:0005545 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding | SoyBase | N/A | ISS |
GO:0030276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: clathrin binding | SoyBase | N/A | ISS |
KOG0251 | KOG | Clathrin assembly protein AP180 and related proteins, contain ENTH domain | JGI | ISS | |
PTHR22951 | Panther | CLATHRIN ASSEMBLY PROTEIN | JGI | ISS | |
PTHR22951:SF1 | Panther | CLATHRIN ASSEMBLY PROTEIN | JGI | ISS | |
PF07651 | PFAM | ANTH domain | JGI | ISS | |
UniRef100_B9SCP6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9SCP6_RICCO | SoyBase | E_val: 0 | ISS |
UniRef100_I1K2S4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K2S4_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma05g24940 not represented in the dataset |
Glyma05g24940 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.05g120800 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g24940.1 sequence type=CDS gene model=Glyma05g24940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCCAAGCACATTAAGAAGAGCCATAGGGGCAGTGAAGGATCAAACGAGCATAGGCCTGGCCATGGTGGGAAACAGCACCTCACTTGCTGACCTTGATGTGGCCATTGTGAAGGCAACAAGGCATGATGAGTACCCAGCTGAAGAGAAGCATCTGAAGGAGATTCTCAGCTTAACATGCTACTCTCGAGCATTCATCAGTGCATGTGTAAACACCCTCTCTAGGCGTCTCAGCAAGACTAGCAGTTGGACAGTGGCTTTAAAAACACTTATTTTGATTCAAAGGCTGTTATCAGATGGTGATCCTGCATATGAGCAAGAAATATTCTTCTCAACTCGCCGCGGAACACGCCTCCTAAACATGTCTGATTTCAGGGGCAACTCAAAATATAATTCATGGGACTTCTGTGCATTTGTGCGCACCTATGCGTTGTATCTAGATGAAAGGCTAGAGTACATGATGCAAAACAAGCGTGGAAAGCGTAGCAGGTTTGCTATTGATGAGGAAGAAGAGGAAACCATGGAAAGAGAAAGTAGATATAGTAGGGAAAGAGAAAAGAATAGAGAAATCTTGAAAGTCACACCATTGTGTGAAATGAAGACTGAGGAGCTATTTTCCAAAATGCAGCACTTGCAATTGCTGGTTGAGCGCTTTCTAGCTTGTCGTCCCACAGGGAGAGCAAAGACACATCGAATTGTGATAGTGGCTCTCTATCCTATTGTGAAGGAGAGTTTCCAAATATATGACAACATTACAGAAATACTGTGTATCTTCATTGACCGTTTCATTGGCATGGAGTTACCTGACTGCATTAAGGTATATGACATTTTCTGTCGTGTTGGGAAACAGTATGATGAACTAGACTTGTTCTACAGCTGGTCCAAGAGTGTCGGAATTGCCCGCTCTACTGAGTACCCAGAGATTGAGAGGGTCACAACTAAGAAGCTAGAGGTCATGGATCAATACATCAGAGACAAAGCACAACACAAAAAGCTATACATCCAAGAAGAAAACAATGAAGAAGAAGAACCAGAGGAAGACATGAATGCAATCAAGGCACTGCCAGCACCAGAATATTTCAATGAGGAACCAGAAGAAGTGAAGGAAGAGACAAAGGAAGAAGATATAAAAGAAGAAAAATTGGTGCAAACAGAAGGTGATCTATTGAATTTAGGAGATGACATGGTGACAAGTCAAGAACATGGGGACAGCCTAGCCTTGGCACTATTTGATGGTGCTTTACCAACGAGTGCCACTCAAGCCCTTCCATGGCACGCTTTTGATGATGCAGCAGATTGGGAAACAGCATTGGTCCAATCATCCAGTAACTTGTCCAACCAGAAGCCATCATTAGGAGGCGGCTTTGACACATTGTTGTTGGATGGTATGTATAGACAAGCAGCAACAAATATGCAAAGACAAAGTCATGGGATGAATGGCAGTGCTAGCAGTGTGGCGCTAGGGTCAGCTGGAAGGCCTGCAATGTTAGCATTGCCAGCACCACCAACATCAGGGAGTGGTTCAAGTTTGGATAGTGCAGATCCATTTGCAGCCTCATTGGCCGTGGCACCTCCAGCTTATGTGCAAATGTCAGAGATAGAGAAGAAACAAAGGTTATTAATGGAGGAACAAGAAATGTGGCAACAATATGCAAGGAGTGGCATGCAAGGAAACGTTGCATTCACAAAACTACAACCTAACAATACTTATCACATGGGACAGTATCCACAAAACTATGGCCATTATTATCATTAA
>Glyma05g24940.1 sequence type=predicted peptide gene model=Glyma05g24940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSPSTLRRAIGAVKDQTSIGLAMVGNSTSLADLDVAIVKATRHDEYPAEEKHLKEILSLTCYSRAFISACVNTLSRRLSKTSSWTVALKTLILIQRLLSDGDPAYEQEIFFSTRRGTRLLNMSDFRGNSKYNSWDFCAFVRTYALYLDERLEYMMQNKRGKRSRFAIDEEEEETMERESRYSREREKNREILKVTPLCEMKTEELFSKMQHLQLLVERFLACRPTGRAKTHRIVIVALYPIVKESFQIYDNITEILCIFIDRFIGMELPDCIKVYDIFCRVGKQYDELDLFYSWSKSVGIARSTEYPEIERVTTKKLEVMDQYIRDKAQHKKLYIQEENNEEEEPEEDMNAIKALPAPEYFNEEPEEVKEETKEEDIKEEKLVQTEGDLLNLGDDMVTSQEHGDSLALALFDGALPTSATQALPWHAFDDAADWETALVQSSSNLSNQKPSLGGGFDTLLLDGMYRQAATNMQRQSHGMNGSASSVALGSAGRPAMLALPAPPTSGSGSSLDSADPFAASLAVAPPAYVQMSEIEKKQRLLMEEQEMWQQYARSGMQGNVAFTKLQPNNTYHMGQYPQNYGHYYH*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||