Glyma05g24920 - SoyBase

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Report for Sequence Feature Glyma05g24920

Feature Type:	gene_model
Chromosome:	Gm05
Start:	31095403
stop:	31099336
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g24920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15010	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr4:8573125-8574864 REVERSE LENGTH=378	SoyBase	E_val: 9.00E-159	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
KOG0762	KOG	Mitochondrial carrier protein	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF160	Panther		JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_I1K2S1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2S1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q940F4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4G15010 protein n=2 Tax=Arabidopsis thaliana RepID=Q940F4_ARATH	SoyBase	E_val: 4.00E-156	ISS

Expression Patterns of Glyma05g24920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g24920

Paralog	Evidence	Comments
Glyma08g08020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g24920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g120600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g24920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g24920

Limit To All Plant Sequences

>Glyma05g24920.2   sequence type=transcript   gene model=Glyma05g24920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGACTGTAAGTATCATTTGAAGTGGTTGGGCGAGTGTATTCGGATGAACAAGCAGAGAGTGTGTAGTGCGTAGGGTTTAAGATCGCGTTCTTTAGATGAACGAGTTATCTCAGAAGCAGACTCTTGTTGTCCATGGGATTGCTGGTGCTGGTTCGGTGGCTTTAGCCACCGCCTTCACTTACCCTCTTGACACCATGAAAGTCCTCATTCAGGTTGGTTCCAGCACCGGTAAAGAATTGGACCATACCCATGTTTTGACCAGACTACTCTCTGTATCCGGCAATGCAGGTTTGTTCAATGGTTTTGGCTGGTTGTTGGTTGGAAGGATTTTTGGTCTGGGAGCACGATTTGGGGTTTATGAAATCCTGTCTGCCTTTTATAAAGATGGTCGGGAAAATAATTATTTGTTTGCTTCTGAGGCTCTTTTGGCTGGCGTGGTAGCTGGTGCCATTGAGGCAGTCATAAGCTCTCCATTCGAACTCATCAAGCTTCGTATGCAAGTTAGCTCTGCTTCATATGTTCCTAGCTCCAACTTTGCTTTGGAAAAGGGGGCTCGTACACCTTTAATTGCAAGATTACTTCATGGCTGTTATCCAGACAGGAGGGCATTGGACCAATATATTGGTCTCATCTCCACCCTAAAAGCCAAAAATACAAACCTGACCAGTGCGTTGCTAGAGTATCCATGGACAATGACAGGATCTGGGAGTCCACCATCAGTTTCCAATGTCAGGAGACCATCTGACATTATATCTTTGGAAGGATGGAGCACATTATGGAGAGGTCTCCGTTCTGGAATTGTCCGAGATTCTGTGTTTGGTGGCGTATTTTTTTCGACCTGGCAATTTCTGCACCAAGCAATGCTAGATTGGAAGGCTGCAGGGATGAATCCTCCACCCAGGTTAAATGAAGAAGTCGGTCCATTGTCTCCTTTGACTGTTAGTCTTACTGCTGGATTCTCAGCTTCAGTTGCTGCTGCTGCTTCCCATAGTTTTGATACTACAAGAAGTAGATCGCAGTGTACTGTGCTGCCAAAGGTATGAATAATGCTGGTTGTTATTGAAAAGTTTGAAACCATGCGAATT

Coding sequences of Glyma05g24920

Limit To All Plant Sequences

>Glyma05g24920.1   sequence type=CDS   gene model=Glyma05g24920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGAGTTATCTCAGAAGCAGACTCTTGTTGTCCATGGGATTGCTGGTGCTGGTTCGGTGGCTTTAGCCACCGCCTTCACTTACCCTCTTGACACCATGAAAGTCCTCATTCAGGTTGGTTCCAGCACCGGTAAAGAATTGGACCATACCCATGTTTTGACCAGACTACTCTCTGTATCCGGCAATGCAGGTTTGTTCAATGGTTTTGGCTGGTTGTTGGTTGGAAGGATTTTTGGTCTGGGAGCACGATTTGGGGTTTATGAAATCCTGTCTGCCTTTTATAAAGATGGTCGGGAAAATAATTATTTGTTTGCTTCTGAGGCTCTTTTGGCTGGCGTGGTAGCTGGTGCCATTGAGGCAGTCATAAGCTCTCCATTCGAACTCATCAAGCTTCGTATGCAAGTTAGCTCTGCTTCATATGTTCCTAGCTCCAACTTTGCTTTGGAAAAGGGGGCTCGTACACCTTTAATTGCAAGATTACTTCATGGCTGTTATCCAGACAGGAGGGCATTGGACCAATATATTGGTCTCATCTCCACCCTAAAAGCCAAAAATACAAACCTGACCAGTGCGTTGCTAGAGTATCCATGGACAATGACAGGATCTGGGAGTCCACCATCAGTTTCCAATGTCAGGAGACCATCTGACATTATATCTTTGGAAGGATGGAGCACATTATGGAGAGGTCTCCGTTCTGGAATTGTCCGAGATTCTGTGTTTGGTGGCGTATTTTTTTCGACCTGGCAATTTCTGCACCAAGCAATGCTAGATTGGAAGGCTGCAGGGATGAATCCTCCACCCAGGTTAAATGAAGAAGTCGGTCCATTGTCTCCTTTGACTGTTAGTCTTACTGCTGGATTCTCAGCTTCAGTTGCTGCTGCTGCTTCCCATAGTTTTGATACTACAAGAAGTAGATCGCAGTGTACTGTGCTGCCAAAGTACATCTCTATGGAGAGAAAGATTCTGAAGTGGAAACGACCAGGAAACAAGTTTGAAAGAATTACTGGGATCCATCCTTCTGACAGGGGTGTCTTGTTCCGTGGTATTGGTTGGCGAATGGCTCGCTCTGGGTTGGCTTCATTCATTATTGTAGGAAGTTATTTATTTGTTGCTGATCAGCTTGCTTCTAGTTTGACTTAA

>Glyma05g24920.2   sequence type=CDS   gene model=Glyma05g24920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGAGTTATCTCAGAAGCAGACTCTTGTTGTCCATGGGATTGCTGGTGCTGGTTCGGTGGCTTTAGCCACCGCCTTCACTTACCCTCTTGACACCATGAAAGTCCTCATTCAGGTTGGTTCCAGCACCGGTAAAGAATTGGACCATACCCATGTTTTGACCAGACTACTCTCTGTATCCGGCAATGCAGGTTTGTTCAATGGTTTTGGCTGGTTGTTGGTTGGAAGGATTTTTGGTCTGGGAGCACGATTTGGGGTTTATGAAATCCTGTCTGCCTTTTATAAAGATGGTCGGGAAAATAATTATTTGTTTGCTTCTGAGGCTCTTTTGGCTGGCGTGGTAGCTGGTGCCATTGAGGCAGTCATAAGCTCTCCATTCGAACTCATCAAGCTTCGTATGCAAGTTAGCTCTGCTTCATATGTTCCTAGCTCCAACTTTGCTTTGGAAAAGGGGGCTCGTACACCTTTAATTGCAAGATTACTTCATGGCTGTTATCCAGACAGGAGGGCATTGGACCAATATATTGGTCTCATCTCCACCCTAAAAGCCAAAAATACAAACCTGACCAGTGCGTTGCTAGAGTATCCATGGACAATGACAGGATCTGGGAGTCCACCATCAGTTTCCAATGTCAGGAGACCATCTGACATTATATCTTTGGAAGGATGGAGCACATTATGGAGAGGTCTCCGTTCTGGAATTGTCCGAGATTCTGTGTTTGGTGGCGTATTTTTTTCGACCTGGCAATTTCTGCACCAAGCAATGCTAGATTGGAAGGCTGCAGGGATGAATCCTCCACCCAGGTTAAATGAAGAAGTCGGTCCATTGTCTCCTTTGACTGTTAGTCTTACTGCTGGATTCTCAGCTTCAGTTGCTGCTGCTGCTTCCCATAGTTTTGATACTACAAGAAGTAGATCGCAGTGTACTGTGCTGCCAAAGGTATGA

Predicted protein sequences of Glyma05g24920

Limit To All Plant Sequences

>Glyma05g24920.1   sequence type=predicted peptide   gene model=Glyma05g24920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNELSQKQTLVVHGIAGAGSVALATAFTYPLDTMKVLIQVGSSTGKELDHTHVLTRLLSVSGNAGLFNGFGWLLVGRIFGLGARFGVYEILSAFYKDGRENNYLFASEALLAGVVAGAIEAVISSPFELIKLRMQVSSASYVPSSNFALEKGARTPLIARLLHGCYPDRRALDQYIGLISTLKAKNTNLTSALLEYPWTMTGSGSPPSVSNVRRPSDIISLEGWSTLWRGLRSGIVRDSVFGGVFFSTWQFLHQAMLDWKAAGMNPPPRLNEEVGPLSPLTVSLTAGFSASVAAAASHSFDTTRSRSQCTVLPKYISMERKILKWKRPGNKFERITGIHPSDRGVLFRGIGWRMARSGLASFIIVGSYLFVADQLASSLT*

>Glyma05g24920.2   sequence type=predicted peptide   gene model=Glyma05g24920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNELSQKQTLVVHGIAGAGSVALATAFTYPLDTMKVLIQVGSSTGKELDHTHVLTRLLSVSGNAGLFNGFGWLLVGRIFGLGARFGVYEILSAFYKDGRENNYLFASEALLAGVVAGAIEAVISSPFELIKLRMQVSSASYVPSSNFALEKGARTPLIARLLHGCYPDRRALDQYIGLISTLKAKNTNLTSALLEYPWTMTGSGSPPSVSNVRRPSDIISLEGWSTLWRGLRSGIVRDSVFGGVFFSTWQFLHQAMLDWKAAGMNPPPRLNEEVGPLSPLTVSLTAGFSASVAAAASHSFDTTRSRSQCTVLPKV*

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